Man pages for glmmTMB
Generalized Linear Mixed Models using Template Model Builder
| as.theta.vcov | Get theta parameterisation of a covariance structure |
| bootmer_methods | support methods for parametric bootstrapping |
| confint.glmmTMB | Calculate confidence intervals |
| diagnose | diagnose model problems |
| dot-adjustX | Adjust a model matrix When not rank deficient, do nothing.... |
| dot-checkRankX | Check for identifiability of fixed effects matrices X, Xzi,... |
| dot-collectDuplicates | collapse duplicated observations |
| downstream_methods | Downstream methods |
| dtruncated_nbinom2 | truncated distributions |
| epil2 | Seizure Counts for Epileptics - Extended |
| family_params | Retrieve family-specific parameters |
| fitTMB | Optimize TMB models and package results, modularly |
| fixef | Extract fixed-effects estimates |
| formatVC | Format the 'VarCorr' Matrix of Random Effects |
| formula.glmmTMB | Extract the formula of a glmmTMB object |
| get_autopar | retrieve current value of TMB autopar setting |
| getCapabilities | List model options that glmmTMB knows about |
| get_cor | transform correlation parameters to and from glmmTMB... |
| getGrpVar | Get Grouping Variable |
| getME.glmmTMB | Extract or Get Generalize Components from a Fitted Mixed... |
| getReStruc | Calculate random effect structure Calculates number of random... |
| getXReTrms | Create X and random effect terms from formula |
| glmmTMB | Fit Models with TMB |
| glmmTMBControl | Control parameters for glmmTMB optimization |
| glmmTMB_methods | Methods for extracting developer-level information from... |
| gt_load | conditionally update glmmTMB object fitted with an old TMB... |
| map.theta.propto | Set map values for theta to be fixed (NA) for propto |
| mkTMBStruc | Extract info from formulas, reTrms, etc., format for TMB |
| nbinom2 | Family functions for glmmTMB |
| numFactor | Factor with numeric interpretable levels. |
| omp_check | Check OpenMP status |
| Owls | Begging by Owl Nestlings |
| predict.glmmTMB | prediction |
| print.VarCorr.glmmTMB | Printing The Variance and Correlation Parameters of a... |
| priors | use of priors in glmmTMB |
| profile.glmmTMB | Compute likelihood profiles for a fitted model |
| ranef.glmmTMB | Extract Random Effects |
| reexports | Objects exported from other packages |
| reinstalling | Reinstalling binary dependencies |
| residuals.glmmTMB | Compute residuals for a glmmTMB object |
| Salamanders | Repeated counts of salamanders in streams |
| set_simcodes | helper function to modify simulation settings for random... |
| sigma.glmmTMB | Extract residual standard deviation or dispersion parameter |
| simulate.glmmTMB | Simulate from a glmmTMB fitted model |
| simulate_new | Simulate from covariate/metadata in the absence of a real... |
| spider_long | Spider data from CANOCO, long format |
| startParams | Change starting parameters, either by residual method or by... |
| VarCorr.glmmTMB | Extract variance and correlation components |
| vcov.glmmTMB | Calculate Variance-Covariance Matrix for a Fitted glmmTMB... |
| weights.glmmTMB | Extract weights from a glmmTMB object |
