getReStruc: Calculate random effect structure Calculates number of random...

In glmmTMB: Generalized Linear Mixed Models using Template Model Builder

Calculate random effect structure Calculates number of random effects, number of parameters, block size and number of blocks. Mostly for internal use.

Description

Calculate random effect structure Calculates number of random effects, number of parameters, block size and number of blocks. Mostly for internal use.

Usage

getReStruc(reTrms, ss = NULL, aa = NULL, reXterms = NULL, fr = NULL)

Arguments

reTrms	random-effects terms list
ss	a vector of character strings indicating a valid covariance structure (one for each RE term). Must be one of names(glmmTMB:::.valid_covstruct); default is to use an unstructured variance-covariance matrix ("us") for all blocks).
aa	additional arguments (i.e. rank, or var-cov matrix)
reXterms	terms objects corresponding to each RE term
fr	model frame

Value

a list

blockNumTheta	number of variance covariance parameters per term
blockSize	size (dimension) of one block
blockReps	number of times the blocks are repeated (levels)
covCode	structure code
simCode	simulation code; should we "zero" (set to zero/ignore), "fix" (set to existing parameter values), "random" (draw new random deviations)?

Examples

data(sleepstudy, package="lme4")
rt <- lme4::lFormula(Reaction~Days+(1|Subject)+(0+Days|Subject),
                    sleepstudy)$reTrms
rt2 <- lme4::lFormula(Reaction~Days+(Days|Subject),
                    sleepstudy)$reTrms
getReStruc(rt)
getReStruc(rt2)

glmmTMB documentation built on Sept. 30, 2024, 9:34 a.m.