splitForm: Split formula containing special random effect terms

In glmmTMB: Generalized Linear Mixed Models using Template Model Builder

Split formula containing special random effect terms

Description

Parse a formula into fixed formula and random effect terms, treating 'special' terms (of the form foo(x|g[,m])) appropriately

Usage

splitForm(
  formula,
  defaultTerm = "us",
  allowFixedOnly = TRUE,
  allowNoSpecials = TRUE,
  debug = FALSE,
  specials = findReTrmClasses()
)

noSpecials(term, delete = TRUE, debug = FALSE, specials = findReTrmClasses())

Arguments

formula	a formula containing special random effect terms
defaultTerm	default type for non-special RE terms
allowFixedOnly	(logical) are formulas with no RE terms OK?
allowNoSpecials	(logical) are formulas with only standard RE terms OK?
debug	debugging mode (print stuff)?
term	language object

Details

Taken from Steve Walker's lme4ord, ultimately from the flexLambda branch of lme4 <https://github.com/stevencarlislewalker/lme4ord/blob/master/R/formulaParsing.R>. Mostly for internal use.

Value

a list containing elements fixedFormula; reTrmFormulas list of x | g formulas for each term; reTrmAddArgs list of function+additional arguments, i.e. list() (non-special), foo() (no additional arguments), foo(addArgs) (additional arguments); reTrmClasses (vector of special functions/classes, as character)

Author(s)

Steve Walker

Examples

splitForm(~x+y)                     ## no specials or RE
splitForm(~x+y+(f|g))               ## no specials
splitForm(~x+y+diag(f|g))           ## one special
splitForm(~x+y+(diag(f|g)))         ## 'hidden' special
splitForm(~x+y+(f|g)+cs(1|g))       ## combination
splitForm(~x+y+(1|f/g))             ## 'slash'; term
splitForm(~x+y+(1|f/g/h))             ## 'slash'; term
splitForm(~x+y+(1|(f/g)/h))             ## 'slash'; term
splitForm(~x+y+(f|g)+cs(1|g)+cs(a|b,stuff))  ## complex special
splitForm(~(((x+y))))               ## lots of parentheses
splitForm(~1+rr(f|g,n=2))
splitForm(~1+s(x, bs = "tp"))

noSpecials(y~1+us(1|f))
noSpecials(y~1+us(1|f),delete=FALSE)
noSpecials(y~us(1|f))
noSpecials(y~us(1|f), delete=FALSE)
noSpecials(y~us(1|f), debug=TRUE)
noSpecials(y~us+1)  ## should *not* delete unless head of a function
noSpecials(~us(1|f)+1)   ## should work on a one-sided formula!
noSpecials(~s(stuff) + a + b, specials = "s")

glmmTMB documentation built on Oct. 7, 2023, 5:07 p.m.