get_allele_bulk: Aggregate into pseudobulk alelle profile
In hahmmr: Haplotype-Aware Hidden Markov Model for RNA
get_allele_bulk R Documentation
Aggregate into pseudobulk alelle profile
Description
Aggregate into pseudobulk alelle profile
Usage
get_allele_bulk(df_allele, gtf, genetic_map = NULL, nu = 0.5, min_depth = 0)
Arguments
df_allele
dataframe Single-cell allele counts
gtf
dataframe Transcript gtf
genetic_map
dataframe Genetic map
nu
numeric Phase switch rate
min_depth
integer Minimum coverage to filter SNPs
Value
dataframe Pseudobulk allele profile
Examples
bulk_example = get_allele_bulk(
df_allele = df_allele_example,
gtf = gtf_hg38)
hahmmr documentation built on Oct. 26, 2023, 1:08 a.m.
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| get_allele_bulk | R Documentation |
Aggregate into pseudobulk alelle profile
Description
Aggregate into pseudobulk alelle profile
Usage
get_allele_bulk(df_allele, gtf, genetic_map = NULL, nu = 0.5, min_depth = 0)
Arguments
df_allele |
dataframe Single-cell allele counts |
gtf |
dataframe Transcript gtf |
genetic_map |
dataframe Genetic map |
nu |
numeric Phase switch rate |
min_depth |
integer Minimum coverage to filter SNPs |
Value
dataframe Pseudobulk allele profile
Examples
bulk_example = get_allele_bulk(
df_allele = df_allele_example,
gtf = gtf_hg38)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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