get_trans_probs_s7: Helper function to calculate transition porbabilities for...
In hahmmr: Haplotype-Aware Hidden Markov Model for RNA
get_trans_probs_s7 R Documentation
Helper function to calculate transition porbabilities for 7-state joint HMM
cn/phase are sclars, only p_s is vectorized
Description
Helper function to calculate transition porbabilities for 7-state joint HMM
cn/phase are sclars, only p_s is vectorized
Usage
get_trans_probs_s7(t, p_s, w, cn_from, phase_from, cn_to, phase_to)
Arguments
t
numeric; CNV state transition probability
p_s
numeric; phase switch probability
w
numeric; relative abundance of states
cn_from
character; originating CNV state
phase_from
character; originating haplotype phase state
cn_to
character; destination CNV state
phase_to
character; destination haplotype phase state
Value
numeric; transition probability
hahmmr documentation built on Oct. 26, 2023, 1:08 a.m.
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| get_trans_probs_s7 | R Documentation |
Helper function to calculate transition porbabilities for 7-state joint HMM cn/phase are sclars, only p_s is vectorized
Description
Helper function to calculate transition porbabilities for 7-state joint HMM cn/phase are sclars, only p_s is vectorized
Usage
get_trans_probs_s7(t, p_s, w, cn_from, phase_from, cn_to, phase_to)
Arguments
t |
numeric; CNV state transition probability |
p_s |
numeric; phase switch probability |
w |
numeric; relative abundance of states |
cn_from |
character; originating CNV state |
phase_from |
character; originating haplotype phase state |
cn_to |
character; destination CNV state |
phase_to |
character; destination haplotype phase state |
Value
numeric; transition probability
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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