get_allele_hmm_s2: Make a 2-state allele HMM - no transitions to netural state

In hahmmr: Haplotype-Aware Hidden Markov Model for RNA

Make a 2-state allele HMM - no transitions to netural state

Description

Make a 2-state allele HMM - no transitions to netural state

Usage

get_allele_hmm_s2(pAD, DP, R, p_s, theta, gamma = 20, r = 0.015)

Arguments

pAD	integer vector Paternal allele counts
DP	integer vector Total alelle counts
p_s	numeric vector Phase switch probabilities
theta	numeric Haplotype imbalance
gamma	numeric Overdispersion in the allele-specific expression

Value

HMM object

hahmmr documentation built on Oct. 26, 2023, 1:08 a.m.