l_lnpois: calculate joint likelihood of a PLN model

In hahmmr: Haplotype-Aware Hidden Markov Model for RNA

calculate joint likelihood of a PLN model

Description

calculate joint likelihood of a PLN model

Usage

l_lnpois(Y_obs, lambda_ref, d, mu, sig, phi = 1)

Arguments

Y_obs	numeric vector Gene expression counts
lambda_ref	numeric vector Reference expression levels
d	numeric Total library size
mu	numeric Global mean expression
sig	numeric Global standard deviation of expression
phi	numeric Fold change of expression

Value

numeric Joint log likelihood

Examples

l_lnpois(c(1, 2), c(1, 2), 1, 1, 1)

hahmmr documentation built on Oct. 26, 2023, 1:08 a.m.