likelihood_allele: Only compute total log likelihood from an allele HMM
In hahmmr: Haplotype-Aware Hidden Markov Model for RNA
likelihood_allele R Documentation
Only compute total log likelihood from an allele HMM
Description
Only compute total log likelihood from an allele HMM
Usage
likelihood_allele(hmm)
Arguments
hmm
HMM object; expect variables x (allele depth), d (total depth),
logPi (log transition prob matrix), delta (prior for each state),
alpha (alpha for each state), beta (beta for each state),
states (states), p_s (phase switch probs)
Value
numeric; total log likelihood
Examples
likelihood_allele(pre_likelihood_hmm)
hahmmr documentation built on Oct. 26, 2023, 1:08 a.m.
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| likelihood_allele | R Documentation |
Only compute total log likelihood from an allele HMM
Description
Only compute total log likelihood from an allele HMM
Usage
likelihood_allele(hmm)
Arguments
hmm |
HMM object; expect variables x (allele depth), d (total depth), logPi (log transition prob matrix), delta (prior for each state), alpha (alpha for each state), beta (beta for each state), states (states), p_s (phase switch probs) |
Value
numeric; total log likelihood
Examples
likelihood_allele(pre_likelihood_hmm)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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