test.between | R Documentation |
Tests the significance of the effect of test.lev on genetic differentiation
test.between(data, test.lev, rand.unit, nperm, ...)
data |
a data frame containing the genotypes for the different loci |
test.lev |
A vector containing the units from which to construct the contingency tables |
rand.unit |
A vector containing the assignment of each observation to the units to be permutted |
nperm |
The number of permutations to carry out for the test |
... |
Mainly here to allow passing diploid=FALSE if necessary |
g.star |
A vector containing all the generated g-statistics, the last one beeing the observed |
p.val |
The p-value associated with the test |
Jerome Goudet jerome.goudet@unil.ch
data(gtrunchier) attach(gtrunchier) #test whether the locality level has a significant effect on genetic structuring test.between(gtrunchier[,-c(1,2)],test.lev=Locality,rand.unit=Patch)
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