test.within | R Documentation |
Tests the significance of the effect of inner.level on genetic differentiation within blocks defined by outer.level
test.within(data, within, test.lev, nperm, ...)
data |
a data frame containing the genotypes for the different loci |
within |
A vector containing the units in which to keep the observations |
test.lev |
A vector containing the units from which to construct the contingency tables |
nperm |
The number of permutations to carry out for the test |
... |
Mainly here to allow passing diploid=FALSE if necessary |
g.star |
A vector containing all the generated g-statistics, the last one beeing the observed |
p.val |
The p-value associated with the test |
Jerome Goudet jerome.goudet@unil.ch
data(gtrunchier) attach(gtrunchier) #tests whether the patch level has a significant effect on genetic structure test.within(gtrunchier[,-c(1,2)],within=Locality,test.lev=Patch)
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