theta.Watt.dosage: Estimates theta_{Watterson} from dosage data
In hierfstat: Estimation and Tests of Hierarchical F-Statistics
theta.Watt.dosage R Documentation
Estimates θ_{Watterson} from dosage data
Description
Estimates θ_{Watterson}=S/a, where S is the number of segregating sites
in a set of sequences and a=1/∑_i^{n-1} i.
Usage
theta.Watt.dosage(dos,L=NULL)
Arguments
dos
a ni X nl dosage matrix containing the number of derived/alternate alleles each individual carries
at each SNP
L
the length of the sequence
Value
if L=NULL (default), returns θ_{Watterson}, else return θ_{Watterson}/L
hierfstat documentation built on May 6, 2022, 1:05 a.m.
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| theta.Watt.dosage | R Documentation |
Estimates θ_{Watterson} from dosage data
Description
Estimates θ_{Watterson}=S/a, where S is the number of segregating sites in a set of sequences and a=1/∑_i^{n-1} i.
Usage
theta.Watt.dosage(dos,L=NULL)
Arguments
dos |
a ni X nl dosage matrix containing the number of derived/alternate alleles each individual carries at each SNP |
L |
the length of the sequence |
Value
if L=NULL (default), returns θ_{Watterson}, else return θ_{Watterson}/L
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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