write.ped: Write ped file for analyses with PLINK

In hierfstat: Estimation and Tests of Hierarchical F-Statistics

Write ped file for analyses with PLINK

Description

write a ped and a map file suitable for analysis with PLINK

Usage

write.ped(dat, ilab = NULL, pop = NULL, 
        fname = "dat",na.str="0",f.id=NULL,m.id=NULL,loc.pos=NULL,sex=NULL)

Arguments

dat	a hierfstat data frame. if pop=NULL, the first column should contain the population identifier, otherwise it contains genotypes at the first locus
ilab	individual labels
pop	population id
fname	filename for ped file
na.str	character string to use for missing values
f.id	father id. default to unknown
m.id	mother id. default to unknown
loc.pos	the loci position default to unknown
sex	the individual sex. default to unknown

Value

a map file containing the loci positions

a ped file containing genotypes etc...

References

Chang et al. (2015) Second-generation PLINK: rising to the challenge of larger and richer datasets

hierfstat documentation built on May 6, 2022, 1:05 a.m.