write.struct: Write structure file
In hierfstat: Estimation and Tests of Hierarchical F-Statistics
write.struct R Documentation
Write structure file
Description
Write a genotype data set to a file in the structure format
Usage
write.struct(dat,ilab=NULL,pop=NULL,MARKERNAMES=FALSE,MISSING=-9,fname="dat.str")
Arguments
dat
a genotype dataframe
ilab
an (optional) column with individual labels
pop
an (optional) column with population identifiers
MARKERNAMES
whether to add a row with marker names. If TRUE, takes the loci names from dat
MISSING
The code for missing alleles
fname
a string containing the file name (default to "dat.str")
Value
a text file in the structure format
Author(s)
Jerome Goudet jerome.goudet@unil.ch
References
Pritchard JK etal. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959
hierfstat documentation built on May 6, 2022, 1:05 a.m.
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| write.struct | R Documentation |
Write structure file
Description
Write a genotype data set to a file in the structure format
Usage
write.struct(dat,ilab=NULL,pop=NULL,MARKERNAMES=FALSE,MISSING=-9,fname="dat.str")
Arguments
dat |
a genotype dataframe |
ilab |
an (optional) column with individual labels |
pop |
an (optional) column with population identifiers |
MARKERNAMES |
whether to add a row with marker names. If TRUE, takes the loci names from dat |
MISSING |
The code for missing alleles |
fname |
a string containing the file name (default to "dat.str") |
Value
a text file in the structure format
Author(s)
Jerome Goudet jerome.goudet@unil.ch
References
Pritchard JK etal. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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