hisse: Hidden State Speciation and Extinction

Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification.

AuthorJeremy M. Beaulieu <jbeaulieu@nimbios.org>, Brian O'Meara <bomeara@utk.edu>
Date of publication2016-08-25 10:00:53
MaintainerJeremy Beaulieu <jbeaulieu@nimbios.org>
LicenseGPL (>= 2)
Version1.8

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Files

hisse
hisse/inst
hisse/inst/doc
hisse/inst/doc/hisse-vignette.R
hisse/inst/doc/hisse-vignette.Rmd
hisse/inst/doc/hisse-vignette.html
hisse/tests
hisse/tests/testthat.R
hisse/tests/testthat
hisse/tests/testthat/test_simulator.R
hisse/tests/testthat/test_likelihood.R
hisse/src
hisse/src/bisse-ext-derivs.c
hisse/src/hisse-ext-derivs.c
hisse/src/Makevars.in
hisse/src/hissenull-ext-derivs.c
hisse/src/Makevars.win
hisse/NAMESPACE
hisse/R
hisse/R/hisseNull4.R hisse/R/bisse2hisse.R hisse/R/hisse.R hisse/R/transMat.R hisse/R/marginRecon.R hisse/R/simulateHisse.R hisse/R/plotHisse.R hisse/R/supportRegion.R hisse/R/singleModels.R
hisse/vignettes
hisse/vignettes/testrecon1.Rsave
hisse/vignettes/hisse-vignette.Rmd
hisse/vignettes/testrecon2.Rsave
hisse/vignettes/testrecon3.Rsave
hisse/README.md
hisse/MD5
hisse/build
hisse/build/vignette.rds
hisse/DESCRIPTION
hisse/man
hisse/man/transMat.Rd hisse/man/simToPhylo.Rd hisse/man/simulateHisse.Rd hisse/man/plotHisse.Rd hisse/man/hisseNull4.Rd hisse/man/marginRecon.Rd hisse/man/bisse2hisse.Rd hisse/man/supportRegion.Rd hisse/man/hisse.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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All documentation is copyright its authors; we didn't write any of that.