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hisse: Hidden State Speciation and Extinction
Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.
Getting started
A newer, faster HiSSE function
Incorporating Fossils in HiSSE, MuHiSSE, and MiSSE
Running GeoHiSSE
Running MiSSE
Running MuHiSSE
Running the old HiSSE function
The Problem with Clade-specific Sampling Fractions
Type I errors, Model rejection, & HiSSE vs. FiSSE
A newer, faster HiSSE function
Incorporating Fossils in HiSSE, MuHiSSE, and MiSSE
Running a Multistate HiSSE model
Running GeoHiSSE
Running MiSSE
Running the old HiSSE function
The Problem with Clade-specific Sampling Fractions
Type I errors, Model rejection, & HiSSE vs. FiSSE
Browse package contents
Package details |
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| Author | Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Daniel Caetano [aut], James Boyko [aut], Thais Vasconcelos [aut] |
| Maintainer | Jeremy Beaulieu <jmbeauli@uark.edu> |
| License | GPL (>= 2) |
| Version | 2.1.11 |
| Package repository | View on CRAN |
| Installation |
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