hisse: Hidden State Speciation and Extinction

Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification.

Install the latest version of this package by entering the following in R:
install.packages("hisse")
AuthorJeremy M. Beaulieu <jbeaulieu@nimbios.org>, Brian O'Meara <bomeara@utk.edu>
Date of publication2017-04-04 22:39:14 UTC
MaintainerJeremy Beaulieu <jbeaulieu@nimbios.org>
LicenseGPL (>= 2)
Version1.8.2

View on CRAN

Files

inst
inst/doc
inst/doc/hisse-vignette.R
inst/doc/hisse-vignette.Rmd
inst/doc/hisse-vignette.html
tests
tests/testthat.R
tests/testthat
tests/testthat/test_simulator.R tests/testthat/test_likelihood.R
src
src/bisse-ext-derivs.c
src/registerDynamicSymbol.c
src/hisse-ext-derivs.c
src/Makevars.in
src/hissenull-ext-derivs.c
src/Makevars.win
NAMESPACE
R
R/hisseNull4.R R/bisse2hisse.R R/hisse.R R/transMat.R R/marginRecon.R R/simulateHisse.R R/plotHisse.R R/supportRegion.R R/singleModels.R
vignettes
vignettes/testrecon1.Rsave
vignettes/hisse-vignette.Rmd
vignettes/testrecon2.Rsave
vignettes/testrecon3.Rsave
MD5
build
build/vignette.rds
DESCRIPTION
man
man/transMat.Rd man/simToPhylo.Rd man/simulateHisse.Rd man/plotHisse.Rd man/hisseNull4.Rd man/marginRecon.Rd man/bisse2hisse.Rd man/supportRegion.Rd man/hisse.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.