TranslateParsMakerGeoHiSSE: Key to translate GeoHiSSE into ClaSSE
In hisse: Hidden State Speciation and Extinction
View source: R/simulateGeoHiSSE.R
TranslateParsMakerGeoHiSSE R Documentation
Key to translate GeoHiSSE into ClaSSE
Description
Simulate key of parnames to translate between GeoHiSSE and ClaSSE models
Usage
TranslateParsMakerGeoHiSSE(k, add.extinction, add.jumps)
Arguments
k
number of hidden states in the model. Minimum is 0 for a model
without hidden states (i.e., GeoSSE).
add.extinction
if the extinction parameter should be separated from extirpation.
add.jumps
if jumps between endemic areas should be added.
Details
Function will only return the parameters that are relevant for a
GeoHiSSE model. The ClaSSE model will have many more parameters. The
extra parameters of the ClaSSE model need to be all set to 0. The number
of parameters of the correspondent ClaSSE model given the parameter
k is given by:
(k+1)*3
Value
Function returns a matrix of characters names. Column 'classe.pars'
have the parameter names for a ClaSSE model and column 'geohisse.pars'
have the parameter names for the matching GeoHiSSE model.
Author(s)
Daniel Caetano
hisse documentation built on Feb. 16, 2023, 10:26 p.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/simulateGeoHiSSE.R
| TranslateParsMakerGeoHiSSE | R Documentation |
Key to translate GeoHiSSE into ClaSSE
Description
Simulate key of parnames to translate between GeoHiSSE and ClaSSE models
Usage
TranslateParsMakerGeoHiSSE(k, add.extinction, add.jumps)
Arguments
k |
number of hidden states in the model. Minimum is 0 for a model without hidden states (i.e., GeoSSE). |
add.extinction |
if the extinction parameter should be separated from extirpation. |
add.jumps |
if jumps between endemic areas should be added. |
Details
Function will only return the parameters that are relevant for a
GeoHiSSE model. The ClaSSE model will have many more parameters. The
extra parameters of the ClaSSE model need to be all set to 0. The number
of parameters of the correspondent ClaSSE model given the parameter
k is given by:
(k+1)*3
Value
Function returns a matrix of characters names. Column 'classe.pars' have the parameter names for a ClaSSE model and column 'geohisse.pars' have the parameter names for the matching GeoHiSSE model.
Author(s)
Daniel Caetano
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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