ProcessSimStrat: Process fossilized birth-death sample of lineages into...
In hisse: Hidden State Speciation and Extinction
View source: R/fossilUtilities.R
ProcessSimStrat R Documentation
Process fossilized birth-death sample of lineages into stratigraphic intervals.
Description
Takes output from GetFossils and places extinct lineages in the tree and produces a properly formatted table of stratigraphic intervals.
Usage
ProcessSimStrat(phy, f)
Arguments
phy
a complete phylogeny that includes both extant and extinct lineages.
f
the table of sampled lineages under the fossilized birth-death process obtained from GetFossils.
Value
Returns an object that contains:
$phy
a tree of extant taxa and sampled extinct tips.
$strat.intervals
a table of stratigraphic intervals, formatted to be input into MiSSE, hisse, MuHiSSE.
hisse documentation built on Feb. 16, 2023, 10:26 p.m.
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View source: R/fossilUtilities.R
| ProcessSimStrat | R Documentation |
Process fossilized birth-death sample of lineages into stratigraphic intervals.
Description
Takes output from GetFossils and places extinct lineages in the tree and produces a properly formatted table of stratigraphic intervals.
Usage
ProcessSimStrat(phy, f)
Arguments
phy |
a complete phylogeny that includes both extant and extinct lineages. |
f |
the table of sampled lineages under the fossilized birth-death process obtained from |
Value
Returns an object that contains:
$phy |
a tree of extant taxa and sampled extinct tips. |
$strat.intervals |
a table of stratigraphic intervals, formatted to be input into |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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