PlotMisseSpace: Plotting function for MiSSEGreedy
In hisse: Hidden State Speciation and Extinction
PlotMisseSpace R Documentation
Plotting function for MiSSEGreedy
Description
A plotting function for visualizing the model space explored in MiSSEGreedy.
Arguments in ... are passed to plot.igraph.
Usage
PlotMisseSpace(x, possible.combos=NULL, arrows.by.weight=FALSE, ...)
Arguments
x
a misse list of model fits obtain from MiSSEGreedy.
possible.combos
data.frame of parameter combinations to try. See 'Details'.
arrows.by.weight
a logical indicating whether arrow direction between adjacent model reflects which model has higher support. The default is FALSE which means arrows show direction of model complexity.
...
Additional parameters to control the igraph plot. See plot.igraph.
Details
If the input x is a list of misse fits from MiSSEGreedy then size of the vertices are in proportion
of their AIC weights. If only the “possible.combos” is input, and x=NULL, then the model space
will be plotted but with each vertex having the same size.
Author(s)
Jeremy M. Beaulieu
References
Vascancelos, T, B.C. O'Meara, and J.M. Beaulieu. In prep.
hisse documentation built on Feb. 16, 2023, 10:26 p.m.
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| PlotMisseSpace | R Documentation |
Plotting function for MiSSEGreedy
Description
A plotting function for visualizing the model space explored in MiSSEGreedy.
Arguments in ... are passed to plot.igraph.
Usage
PlotMisseSpace(x, possible.combos=NULL, arrows.by.weight=FALSE, ...)
Arguments
x |
a |
possible.combos |
data.frame of parameter combinations to try. See 'Details'. |
arrows.by.weight |
a logical indicating whether arrow direction between adjacent model reflects which model has higher support. The default is |
... |
Additional parameters to control the igraph plot. See |
Details
If the input x is a list of misse fits from MiSSEGreedy then size of the vertices are in proportion
of their AIC weights. If only the “possible.combos” is input, and x=NULL, then the model space
will be plotted but with each vertex having the same size.
Author(s)
Jeremy M. Beaulieu
References
Vascancelos, T, B.C. O'Meara, and J.M. Beaulieu. In prep.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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