calc_hep_fu: Calculate the free chemical in the hepaitic clearance assay

In httk: High-Throughput Toxicokinetics

Calculate the free chemical in the hepaitic clearance assay

Description

This function uses the method from Kilford et al. (2008) to calculate the fraction of unbound chemical in the hepatocyte intrinsic clearance assay. The bound chemical is presumed to be unavailable during the performance of the assay, so this fraction can be used to increase the apparent clearance rate to better estimate in vivo clearance. For bases, the fraction of chemical unbound in hepatocyte clearance assays (fu_hep) is calculated in terms of logP_ow but for neutrual and acidic compounds we use logD_ow (from calc_dow). Here we denote the appropriate partition coefficient as "logP/D". Kilford et al. (2008) calculates fu_hep = 1/(1 + 125*V_R*10^(0.072*logP/D² + 0.067*logP/D-1.126))

Usage

calc_hep_fu(
  chem.cas = NULL,
  chem.name = NULL,
  dtxsid = NULL,
  parameters = NULL,
  Vr = 0.005,
  pH = 7.4
)

Arguments

chem.cas	Chemical Abstract Services Registry Number (CAS-RN) – if parameters is not specified then the chemical must be identified by either CAS, name, or DTXISD
chem.name	Chemical name (spaces and capitalization ignored) – if parameters is not specified then the chemical must be identified by either CAS, name, or DTXISD
dtxsid	EPA's 'DSSTox Structure ID (https://comptox.epa.gov/dashboard) – if parameters is not specified then the chemical must be identified by either CAS, name, or DTXSIDs
parameters	Parameters from the appropriate parameterization function for the model indicated by argument model
Vr	Ratio of cell volume to incubation volume. Default (0.005) is taken from
pH	pH of the incupation medium.

Details

Note that octanal:water partitioning above 1:1,000,000 (LogP_ow > 6) are truncated at 1:1,000,000 because greater partitioning would likely take longer than hepatocyte assay itself.

Value

A numeric fraction between zero and one

Author(s)

John Wambaugh and Robert Pearce

References

\insertRef

kilford2008hepatocellularhttk

\insertRef

wetmore2015incorporatinghttk

See Also

apply_clint_adjustment

httk documentation built on Sept. 11, 2024, 9:32 p.m.