hypervolume: High-Dimensional Kernel Density Estimation and Geometry Operations
Version 1.4.1

Estimates the shape and volume of high-dimensional datasets and performs set operations: intersection / overlap, union, unique components, inclusion test, and hole detection. Uses stochastic geometry approach to high-dimensional kernel density estimation. Builds n-dimensional convex hulls (polytopes). Can measure the n-dimensional ecological hypervolume and perform species distribution modeling.

Browse man pages Browse package API and functions Browse package files

AuthorBenjamin Blonder
Date of publication2015-11-18 09:58:14
MaintainerBenjamin Blonder <bblonder@gmail.com>
LicenseGPL-3
Version1.4.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("hypervolume")

Man pages

estimate_bandwidth: Kernel bandwidth estimators for hypervolumes
expectation_box: Hyperbox, hyperball expectation
expectation_convex: Convex expectation
expectation_maximal: Maximal expectation
get_volume: Extract volume
hypervolume: Hypervolume construction
Hypervolume-class: Class hypervolume
hypervolume_distance: Distance between two hypervolumes
hypervolume_holes: Hole detection
hypervolume_importance: Hypervolume variable importance
hypervolume_inclusion_test: Inclusion test
hypervolume_join: Concatenate hypervolumes
HypervolumeList-class: Class HypervolumeList
hypervolume-package: N-dimensional hypervolume operations
hypervolume_prune: Removes small hypervolumes from a HypervolumeList
hypervolume_segment: Segments a hypervolume into multiple separate hypervolumes.
hypervolume_set: Set operations (intersection / union / unique components)
hypervolume_sorensen_overlap: Sorensen similarity index for hypervolume set operations
hypervolume_thin: Reduces the number of random points in a hypervolume
morphSnodgrassHeller: Morphological data for Darwin's finches
plot.Hypervolume: Plot a hypervolume or list of hypervolumes
quercus: Data and demo for Quercus (oak) tree distributions
summary.Hypervolume: Summary of hypervolume

Functions

Hypervolume-class Man page
HypervolumeList-class Man page
estimate_bandwidth Man page Source code
evalfrectangular Source code
evalfspherical Source code
expectation_ball Man page Source code
expectation_box Man page Source code
expectation_convex Man page Source code
expectation_maximal Man page Source code
expectednumber Source code
extendrange Source code
fastPdist2 Source code
flagexterior Source code
get_volume Man page
get_volume,Hypervolume-method Man page
get_volume,HypervolumeList-method Man page
get_volume.Hypervolume Man page Source code
get_volume.HypervolumeList Man page Source code
hypervolume Man page Source code
hypervolume-package Man page
hypervolume_distance Man page Source code
hypervolume_holes Man page Source code
hypervolume_importance Man page Source code
hypervolume_inclusion_test Man page Source code
hypervolume_join Man page Source code
hypervolume_prune Man page Source code
hypervolume_segment Man page Source code
hypervolume_set Man page Source code
hypervolume_sorensen_overlap Man page Source code
hypervolume_thin Man page Source code
inhull Source code
kdtree_ball_query_multiple Source code
kdtree_build Source code
kdtree_build_intl Source code
kdtree_range_query_multiple Source code
morphSnodgrassHeller Man page
nball_volume Source code
plot.Hypervolume Man page Source code
plot.HypervolumeList Man page Source code
quercus Man page
randsphere Source code
repmat Source code
rgb2rgba Source code
rgb2rgbdark Source code
rwmetro Source code
show.Hypervolume Man page
show.HypervolumeList Man page
summary.Hypervolume Man page Source code
summary.HypervolumeList Man page Source code
volume_calculation Source code

Files

src
src/convert.cpp
src/Makevars
src/fastPdist2.cpp
src/MyHeaps.h
src/KDTree.h
src/Makevars.win
src/RcppExports.cpp
NAMESPACE
demo
demo/finch.R
demo/holes_finch.R
demo/quercus.R
demo/00Index
data
data/morphSnodgrassHeller.txt.gz
data/quercus.txt.gz
R
R/hypervolume_holes.R
R/hypervolume.R
R/hypervolume_prune.R
R/kdtree.R
R/hypervolume_thin.R
R/repmat.R
R/hypervolume_plot.R
R/evalfspherical.R
R/expectation.R
R/hypervolume_inclusion_test.R
R/hypervolume_sorensen_overlap.R
R/hypervolume_segment.R
R/hypervolume_distance.R
R/inhull.R
R/metropolis.R
R/RcppExports.R
R/AllClassDefinitions.R
R/hypervolume_importance.R
R/estimate_bandwidth.R
R/flagexterior.R
R/evalfrectangular.R
R/volume_calculation.R
R/hypervolume_set.R
R/rgb2rgba.R
MD5
DESCRIPTION
man
man/summary.Hypervolume.Rd
man/expectation_maximal.Rd
man/Hypervolume-class.Rd
man/hypervolume_holes.Rd
man/get_volume.Rd
man/hypervolume-package.Rd
man/hypervolume_set.Rd
man/estimate_bandwidth.Rd
man/hypervolume_inclusion_test.Rd
man/hypervolume.Rd
man/hypervolume_segment.Rd
man/quercus.Rd
man/hypervolume_importance.Rd
man/morphSnodgrassHeller.Rd
man/hypervolume_join.Rd
man/HypervolumeList-class.Rd
man/expectation_box.Rd
man/hypervolume_thin.Rd
man/hypervolume_sorensen_overlap.Rd
man/expectation_convex.Rd
man/hypervolume_distance.Rd
man/plot.Hypervolume.Rd
man/hypervolume_prune.Rd
hypervolume documentation built on May 19, 2017, 6:05 p.m.