hypervolume: High-Dimensional Kernel Density Estimation and Geometry Operations

Estimates the shape and volume of high-dimensional datasets and performs set operations: intersection / overlap, union, unique components, inclusion test, and hole detection. Uses stochastic geometry approach to high-dimensional kernel density estimation. Builds n-dimensional convex hulls (polytopes). Can measure the n-dimensional ecological hypervolume and perform species distribution modeling.

AuthorBenjamin Blonder
Date of publication2015-11-18 09:58:14
MaintainerBenjamin Blonder <bblonder@gmail.com>
LicenseGPL-3
Version1.4.1

View on CRAN

Functions

estimate_bandwidth Man page
expectation_ball Man page
expectation_box Man page
expectation_convex Man page
expectation_maximal Man page
get_volume Man page
get_volume.Hypervolume Man page
get_volume.HypervolumeList Man page
get_volume,HypervolumeList-method Man page
get_volume,Hypervolume-method Man page
hypervolume Man page
Hypervolume-class Man page
hypervolume_distance Man page
hypervolume_holes Man page
hypervolume_importance Man page
hypervolume_inclusion_test Man page
hypervolume_join Man page
HypervolumeList-class Man page
hypervolume-package Man page
hypervolume_prune Man page
hypervolume_segment Man page
hypervolume_set Man page
hypervolume_sorensen_overlap Man page
hypervolume_thin Man page
morphSnodgrassHeller Man page
plot.Hypervolume Man page
plot.HypervolumeList Man page
quercus Man page
show.Hypervolume Man page
show.HypervolumeList Man page
summary.Hypervolume Man page
summary.HypervolumeList Man page

Files

hypervolume
hypervolume/src
hypervolume/src/convert.cpp
hypervolume/src/Makevars
hypervolume/src/fastPdist2.cpp
hypervolume/src/MyHeaps.h
hypervolume/src/KDTree.h
hypervolume/src/Makevars.win
hypervolume/src/RcppExports.cpp
hypervolume/NAMESPACE
hypervolume/demo
hypervolume/demo/finch.R
hypervolume/demo/holes_finch.R
hypervolume/demo/quercus.R
hypervolume/demo/00Index
hypervolume/data
hypervolume/data/morphSnodgrassHeller.txt.gz
hypervolume/data/quercus.txt.gz
hypervolume/R
hypervolume/R/hypervolume_holes.R hypervolume/R/hypervolume.R hypervolume/R/hypervolume_prune.R hypervolume/R/kdtree.R hypervolume/R/hypervolume_thin.R hypervolume/R/repmat.R hypervolume/R/hypervolume_plot.R hypervolume/R/evalfspherical.R hypervolume/R/expectation.R hypervolume/R/hypervolume_inclusion_test.R hypervolume/R/hypervolume_sorensen_overlap.R hypervolume/R/hypervolume_segment.R hypervolume/R/hypervolume_distance.R hypervolume/R/inhull.R hypervolume/R/metropolis.R hypervolume/R/RcppExports.R hypervolume/R/AllClassDefinitions.R hypervolume/R/hypervolume_importance.R hypervolume/R/estimate_bandwidth.R hypervolume/R/flagexterior.R hypervolume/R/evalfrectangular.R hypervolume/R/volume_calculation.R hypervolume/R/hypervolume_set.R hypervolume/R/rgb2rgba.R
hypervolume/MD5
hypervolume/DESCRIPTION
hypervolume/man
hypervolume/man/summary.Hypervolume.Rd hypervolume/man/expectation_maximal.Rd hypervolume/man/Hypervolume-class.Rd hypervolume/man/hypervolume_holes.Rd hypervolume/man/get_volume.Rd hypervolume/man/hypervolume-package.Rd hypervolume/man/hypervolume_set.Rd hypervolume/man/estimate_bandwidth.Rd hypervolume/man/hypervolume_inclusion_test.Rd hypervolume/man/hypervolume.Rd hypervolume/man/hypervolume_segment.Rd hypervolume/man/quercus.Rd hypervolume/man/hypervolume_importance.Rd hypervolume/man/morphSnodgrassHeller.Rd hypervolume/man/hypervolume_join.Rd hypervolume/man/HypervolumeList-class.Rd hypervolume/man/expectation_box.Rd hypervolume/man/hypervolume_thin.Rd hypervolume/man/hypervolume_sorensen_overlap.Rd hypervolume/man/expectation_convex.Rd hypervolume/man/hypervolume_distance.Rd hypervolume/man/plot.Hypervolume.Rd hypervolume/man/hypervolume_prune.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.