Description Usage Arguments Details Value References Examples

View source: R/estimate_bandwidth.R

Estimates bandwidth vector from data using multiple approaches.

1 | ```
estimate_bandwidth(data,method="silverman")
``` |

`data` |
m x n matrix or data frame, where m is the number of observations and n the number of dimensions. |

`method` |
One of |

The Silverman (`"silverman"`

) estimator is defined as 1.06 * sd(X) * m^(-1/5) where m is the number of observations and X is the data vector in each dimension. Minimizes mean integrated square error along each axis independently. This is the default option due ONLY to computational simplicity.

The plug-in (`"plug-in"`

) estimator is defined using a diagonal plug-in estimator with a 2-stage pilot estimation and a pre-scaling transformation (in `ks::Hpi.diag`

). The resulting diagonal variances are then transformed to standard deviations and multiplied by two to be consistent for the box kernels used here. Available only in n<7 dimensions. Minimizes sum of asymptotic mean squared error.

The cross-validation (`"cross-validation"`

) estimator is defined using a diagonal smoothed cross validation estimator with a 2-stage pilot estimation and a pre-scaling transformation (in `ks::Hscv.diag`

). The resulting diagonal variances are then transformed to standard deviations and multiplied by two to be consistent for the box kernels used here. Available only in n<7 dimensions. Minimizes sum of asymptotic mean squared error.

Note that all estimators are optimal only for normal kernels, whereas the hypervolume algorithms use box kernels - as the number of data points increases, this difference will become increasingly less important.

Computational run-times for the plug-in and cross-validation estimators may become infeasibly large in n>=4 dimensions.

Vector of length n with each entry corresponding to the estimated bandwidth along each axis.

Duong, T. (2007) ks: Kernel Density Estimation and Kernel Discriminant Analysis for Multivariate Data in R. Journal of Statistical Software 21, (7)

1 2 3 4 | ```
data(iris)
print(estimate_bandwidth(iris[,1:2],method="silverman"))
print(estimate_bandwidth(iris[,1:2],method="plug-in"))
print(estimate_bandwidth(iris[,1:2],method="cross-validation"))
``` |

```
Loading required package: Rcpp
Loading required package: rgl
Warning messages:
1: In rgl.init(initValue, onlyNULL) : RGL: unable to open X11 display
2: 'rgl_init' failed, running with rgl.useNULL = TRUE
3: .onUnload failed in unloadNamespace() for 'rgl', details:
call: fun(...)
error: object 'rgl_quit' not found
[1] 0.6444402 0.3392117
[1] 0.557976 0.309567
[1] 0.6098698 0.3377849
```

hypervolume documentation built on Nov. 17, 2017, 6:21 a.m.

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