API for hzar
Hybrid Zone Analysis using R
| Global functions | |
|---|---|
| PP.fz.getCheckFunc | Source code |
| PP.fz.oldCheckFunc | Source code |
| PP.fzCaMnRc | Source code |
| PP.fzCline.add | Source code |
| PP.fzCline.addBest | Source code |
| PP.fzCline.addMany | Source code |
| PP.fzCline.addOne | Source code |
| PP.fzCline.reduce | Source code |
| bLLSLDSFchoice | Source code |
| bLLSumDistSF | Source code |
| bLLSumLocDistFreq | Source code |
| bLLdist | Source code |
| center | Source code |
| cline.exp.scale | Source code |
| cline.extract.modelPrep | Source code |
| cline.func.gen | Source code |
| cline.pCenter | Source code |
| cline.pLower | Source code |
| cline.pUpper | Source code |
| clineMetaModel | Man page |
| compileLLfunc | Source code |
| deltaL | Source code |
| deltaM | Source code |
| deltaR | Source code |
| eval.intercept | Source code |
| eval.kappa | Source code |
| fitter.gen.rParam.uniform | Source code |
| fitter.gen.samples.rect | Source code |
| fitter.getCovWeights | Source code |
| freqCompileLLEdge | Source code |
| freqCompileLLF | Source code |
| freqCompilePDF | Source code |
| g.LLfunc | Source code |
| g.LLfuncA | Source code |
| g.sMuVarL | Source code |
| g.sMuVarR | Source code |
| g.suggestAll | Source code |
| gCenterExpF | Source code |
| gTailExpF | Source code |
| guassianLLExpF | Source code |
| guassianLLSampleExpF | Source code |
| guassianThetaLLExpF | Source code |
| hzar | Man page |
| hzar-package | Man page |
| hzar.AIC.default | Man page Source code |
| hzar.AIC.hzar.cline | Man page Source code |
| hzar.AIC.hzar.dataGroup | Man page Source code |
| hzar.AIC.hzar.obsDataGroup | Man page Source code |
| hzar.AICc.default | Man page Source code |
| hzar.AICc.hzar.cline | Man page Source code |
| hzar.AICc.hzar.dataGroup | Man page Source code |
| hzar.AICc.hzar.obsDataGroup | Man page Source code |
| hzar.chain.doSeq | Man page |
| hzar.cline | Man page |
| hzar.copyModelLabels | Man page Source code |
| hzar.cov.mcmc | Man page Source code |
| hzar.cov.rect | Man page Source code |
| hzar.dBernoulli.LL | Man page Source code |
| hzar.dataGroup | Man page |
| hzar.dataGroup.add | Man page Source code |
| hzar.dataGroup.null | Man page Source code |
| hzar.doCLTData1DPops | Man page Source code |
| hzar.doCLTData1DRaw | Man page Source code |
| hzar.doChain.multi | Man page Source code |
| hzar.doFit | Man page Source code |
| hzar.doFit.multi | Man page Source code |
| hzar.doMolecularData1DPops | Man page Source code |
| hzar.doMorphoSets | Man page Source code |
| hzar.doNormalData1DPops | Man page |
| hzar.doNormalData1DRaw | Man page Source code |
| hzar.eval.clineLL | Man page Source code |
| hzar.extract.obsData | Man page Source code |
| hzar.extract.old.model.gen | Man page Source code |
| hzar.extract.old.model.req | Man page Source code |
| hzar.first.fitRequest.gC | Man page |
| hzar.first.fitRequest.old.ML | Man page |
| hzar.fit2DataGroup | Man page Source code |
| hzar.fitRequest | Man page |
| hzar.fzCline | Man page |
| hzar.gen.cline | Man page Source code |
| hzar.get.ML.cline | Man page Source code |
| hzar.getCredCut | Man page Source code |
| hzar.getCredParam | Man page Source code |
| hzar.getCredParamRed | Man page Source code |
| hzar.getLLCutParam | Man page Source code |
| hzar.make.LLfunc.null | Man page |
| hzar.make.cline | Man page Source code |
| hzar.make.clineLLfunc.old.ML | Man page Source code |
| hzar.make.clineLLfunc.old.bayes | Man page Source code |
| hzar.make.dataGroup | Man page Source code |
| hzar.make.fitRequest | Man page Source code |
| hzar.make.fzCline | Man page Source code |
| hzar.make.mcmcParam | Man page Source code |
| hzar.make.obsDataGroup | Man page Source code |
| hzar.makeCline1DCLT | Man page Source code |
| hzar.makeCline1DFreq | Man page |
| hzar.makeCline1DNormal | Man page Source code |
| hzar.makeTraitObsData | Man page Source code |
| hzar.map.distanceFromSite | Man page Source code |
| hzar.map.dms2deg | Man page Source code |
| hzar.map.greatCircleDistance | Man page Source code |
| hzar.map.latLong.dms | Man page Source code |
| hzar.map.latLongSites | Man page Source code |
| hzar.map.latLongSites.dms | Man page Source code |
| hzar.mapSiteDist | Man page Source code |
| hzar.mcmc.bindLL | Man page Source code |
| hzar.meta.fix | Man page Source code |
| hzar.meta.fix<- | Man page |
| hzar.meta.init | Man page Source code |
| hzar.meta.init<- | Man page |
| hzar.meta.lower | Man page Source code |
| hzar.meta.lower<- | Man page |
| hzar.meta.tune | Man page Source code |
| hzar.meta.tune<- | Man page |
| hzar.meta.upper | Man page Source code |
| hzar.meta.upper<- | Man page |
| hzar.model.addBoxReq | Man page Source code |
| hzar.model.addCenterRange | Man page Source code |
| hzar.model.addMaxCenter | Man page Source code |
| hzar.model.addMaxDelta | Man page Source code |
| hzar.model.addMaxVariance | Man page Source code |
| hzar.model.addMaxWidth | Man page Source code |
| hzar.model.addMinCenter | Man page Source code |
| hzar.model.addMuRange | Man page Source code |
| hzar.model.addNormalBox | Man page Source code |
| hzar.multiFitRequest | Man page Source code |
| hzar.next.fitRequest | Man page Source code |
| hzar.obsData | Man page |
| hzar.obsDataGroup | Man page |
| hzar.overPlot.fzCline | Man page Source code |
| hzar.plot.cline | Man page Source code |
| hzar.plot.fzCline | Man page Source code |
| hzar.plot.obsData | Man page Source code |
| hzar.profile.dataGroup | Man page |
| hzar.qScores | Man page Source code |
| hzar.qScores.dataGroup | Man page Source code |
| hzar.qScores.getScores | Man page Source code |
| hzar.qScores.obsDataGroup | Man page Source code |
| hzar.sameModel | Man page Source code |
| hzar.sameObsData | Man page Source code |
| hzar.yLabel | Man page Source code |
| latLong.d | Source code |
| latLong.p | Source code |
| logLikeCLTEstPopMean | Source code |
| makeGExp | Source code |
| manakinLocations | Man page |
| manakinMolecular | Man page |
| manakinMorphological | Man page |
| meta.check | Source code |
| meta.check.names | Source code |
| meta.fix | Source code |
| meta.fixValue | Source code |
| meta.init | Source code |
| meta.lower | Source code |
| meta.param.m | Source code |
| meta.param.names | Source code |
| meta.tune | Source code |
| meta.upper | Source code |
| midpoints | Source code |
| mkParam | Source code |
| mkn.fixFactor | Source code |
| model.addMaxParam | Source code |
| model.addMinParam | Source code |
| model.addParamRange | Source code |
| model.addReqClause | Source code |
| muExpF | Source code |
| muL | Source code |
| muR | Source code |
| mvGExpF | Source code |
| obs.g.summary | Source code |
| old.dBernoulli.LL | Source code |
| old.doMorphoSets | Source code |
| pTailExpF | Source code |
| param.check | Source code |
| param.fix | Source code |
| param.init | Source code |
| param.lower | Source code |
| param.name | Source code |
| param.tune | Source code |
| param.upper | Source code |
| pdms2deg | Source code |
| print.clineMetaModel | Source code |
| print.clineParameter | Source code |
| print.hzar.fitRequest | Source code |
| pullMinScore | Source code |
| qTailExpF | Source code |
| sampleLikelihoodMolecularPop | Source code |
| setupCLTCenterClineParameters | Source code |
| sigmoidExpF | Source code |
| splitParameters | Source code |
| step1VGExpF | Source code |
| step1VectorExpF | Source code |
| tVec.dBernoulli.LL | Source code |
| tVec.make | Source code |
| tVec.makeTraitObsData | Source code |
| tauL | Source code |
| tauM | Source code |
| tauR | Source code |
| thEvalFExp | Source code |
| vCenterExpF | Source code |
| vTailExpF | Source code |
| varExpF | Source code |
| varH | Source code |
| varL | Source code |
| varR | Source code |
| wMax | Source code |
| width | Source code |
