hzar.make.dataGroup: Make a 'hzar.dataGroup' object with given parameters.

In hzar: Hybrid Zone Analysis using R

Description

Make a hzar.dataGroup object with given parameters. This method only needs the mcmc chain to encapsulate and the log likelhood function generated by hzar.make.clineLLfunc.old.ML or hzar.make.clineLLfunc.old.bayes.

Use hzar.dataGroup.add and hzar.fit2DataGroup instead of this method as they operate directly on a hzar.fitRequest object.

Usage

hzar.make.dataGroup(data.mcmc,
                    llFunc,
                    ML.cline = NULL,
                    doPar = FALSE,
                    data.LL = hzar.eval.clineLL(llFunc = llFunc,
                                                data = data.mcmc,
                                                doPar = doPar),
                    data.param = as.data.frame(data.mcmc),
                    obsData = hzar.extract.obsData(llFunc))

Arguments

data.mcmc	The mcmc chain to encapsulate.
llFunc	The log likelihood function of the model.
ML.cline	The hzar.cline of maximum likelihood. Automatically calculated from data.mcmc if NULL.
doPar	Argument passed to hzar.eval.clineLL.
data.LL	The log likelihood of each row of data.mcmc.
data.param	data.mcmc as a data.frame.
obsData	The hzar.obsData object backing the hzar.dataGroup created.

Value

Object of class hzar.dataGroup

llFunc	llFunc from above.
data.mcmc	data.mcmc from above.
data.param	data.mcmc as a data.frame.
data.LL	The log likelihood of each row of data.param.
ML.cline	See hzar.get.ML.cline.
obsData	The hzar.obsData object backing llFunc.

Author(s)

Graham Derryberry [e-mail]

See Also

hzar.eval.clineLL hzar.extract.obsData hzar.dataGroup.add hzar.fit2DataGroup

hzar documentation built on May 2, 2019, 7 a.m.