hzar.plot.cline: Generate a plot of the cline.
In hzar: Hybrid Zone Analysis using R

Description Usage Arguments Author(s) See Also Examples

Plots a line representing the expected frequency versus distance for the given object. For hzar.dataGroup and hzar.obsDataGroup objects, plots the observed data backing the model. For hzar.obsDataGroup objects, plots the maximum likelihood cline for each model.

1	hzar.plot.cline(cline, add = FALSE, ylim=FALSE, ...)

`cline`	A hzar.cline, hzar.dataGroup or hzar.obsDataGroup object.
`add`	Add to an existing plot if TRUE.
`ylim`	Grapical parameter passed to `plot`. If FALSE, determine ylim from `cline` if needed.
`...`	Arguments to be passed to methods, such as graphical parameters (see `plot`).

Graham Derryberry asterion@alum.mit.edu

plot

data(manakinMolecular);
mknAdaA <-
  hzar.doMolecularData1DPops(manakinMolecular$distance,
                             manakinMolecular$ada.A,
                             manakinMolecular$ada.nSamples);
hzar.plot.obsData(mknAdaA);
mknAdaAmodel <-
  hzar.makeCline1DFreq(mknAdaA, scaling="fixed",tails="none");
mknAdaAmodel <-
  hzar.model.addBoxReq(mknAdaAmodel,-30,600);
mknAdaAmodelFitR <-
   hzar.first.fitRequest.old.ML(model=mknAdaAmodel ,
                                mknAdaA,
                                verbose=FALSE);
mknAdaAcline <- hzar.gen.cline(list(center=300,width=10),
                               mknAdaAmodelFitR);
hzar.plot.cline(mknAdaAmodelFitR);
hzar.plot.cline(mknAdaAcline,add=TRUE);