manakinMolecular: Molecular data samples for multiple loci accross the Manakin...

In hzar: Hybrid Zone Analysis using R

Description

Allele frequencies for multiple loci from localitys sampled in the Manakin Cline.

Usage

data(manakinMolecular)

Format

A data frame with 11 observations on the following 30 variables.

locationID

ID code for the locality, a factor with levels B C D E F G H I J K L

distance

The distance from locality A

ada.A

The frequency of allelle A of locus Ada

ada.B

The frequency of allelle B of locus Ada

ada.nSamples

The number of allelles sampled from locus Ada

ak2.A

The frequency of allelle A of locus Ak2

ak2.B

The frequency of allelle B of locus Ak2

ak2.nSamples

The number of allelles sampled from locus Ak2

gsr.A

The frequency of allelle A of locus Gsr

gsr.B

The frequency of allelle B of locus Gsr

gsr.C

The frequency of allelle C of locus Gsr

gsr.D

The frequency of allelle D of locus Gsr

gsr.E

The frequency of allelle E of locus Gsr

gsr.nSamples

The number of allelles sampled from locus Gsr

pgm2.A

The frequency of allelle A of locus Pgm2

pgm2.B

The frequency of allelle B of locus Pgm2

pgm2.C

The frequency of allelle C of locus Pgm2

pgm2.D

The frequency of allelle D of locus Pgm2

pgm2.nSamples

The number of allelles sampled from locus Pgm2

l5.A

The frequency of allelle A of locus L5

l5.B

The frequency of allelle B of locus L5

l5.nSamples

The number of allelles sampled from locus L5

pscn3.A

The frequency of allelle A of locus Pscn3

pscn3.B

The frequency of allelle B of locus Pscn3

pscn3.nSamples

The number of allelles sampled from locus Pscn3

mtDNA.A

The frequency of allelle A of mitochondrial DNA

mtDNA.B

The frequency of allelle B of mitochondrial DNA

mtDNA.nSamples

The number of allelles sampled from mitochondrial DNA

geneticHybridIndex.mu

The mean genetic hybrid index value

geneticHybridIndex.sigma

The standard deviation of the genetic hybrid index value

Source

Brumfield, R. T., R. W. Jernigan, D. B. McDonald, and M. J. Braun. 2001. Evolutionary implications of divergent clines in an avian (Manacus: Aves) hybrid zone. Evolution 55:2070-2087.

Examples

data(manakinMolecular)
str(manakinMolecular) ;

hzar documentation built on May 2, 2019, 7 a.m.