hzar.gen.cline: Make a 'hzar.cline' object using the given parameters and...
In hzar: Hybrid Zone Analysis using R

Description Usage Arguments Value Author(s) See Also Examples

Make a hzar.cline object using the given parameters and model.

1	hzar.gen.cline(free.parameters, fitRequest)

`free.parameters`	A named list of free parameter values.
`fitRequest`	An object refering to the model that should be used, such as a `hzar.fitRequest` or `hzar.dataGroup` object.

The hzar.cline object requested.

Graham Derryberry asterion@alum.mit.edu

hzar.cline

data(manakinMolecular);
mknAdaA <-
  hzar.doMolecularData1DPops(manakinMolecular$distance,
                             manakinMolecular$ada.A,
                             manakinMolecular$ada.nSamples);
hzar.plot.obsData(mknAdaA);
mknAdaAmodel <-
  hzar.makeCline1DFreq(mknAdaA, scaling="fixed",tails="none");
mknAdaAmodel <-
  hzar.model.addBoxReq(mknAdaAmodel,-30,600);
mknAdaAmodelFitR <-
   hzar.first.fitRequest.old.ML(model=mknAdaAmodel ,
                                mknAdaA,
                                verbose=FALSE);
mknAdaAcline <- hzar.gen.cline(list(center=300,width=10),
                               mknAdaAmodelFitR);
str(mknAdaAcline);
hzar.plot.cline(mknAdaAmodelFitR);
hzar.plot.cline(mknAdaAcline,add=TRUE);