Files in iRfcb

Tools for Managing Imaging FlowCytobot (IFCB) Data

NEWS.md README.md R/ifcb_is_in_basin.R R/ifcb_helper_functions.R R/ifcb_zip_pngs.R R/ifcb_read_hdr_data.R R/ifcb_get_shark_example.R R/ifcb_convert_filenames.R R/ifcb_get_ferrybox_data.R R/ifcb_psd_plot.R R/ifcb_run_image_gallery.R R/ifcb_prepare_whoi_plankton.R R/ifcb_annotate_batch.R R/ifcb_extract_biovolumes.R R/iRfcb-package.R R/ifcb_zip_matlab.R R/ifcb_create_manifest.R R/ifcb_volume_analyzed.R R/ifcb_get_mat_variable.R R/ifcb_py_install.R R/ifcb_read_mat.R R/ifcb_get_trophic_type.R R/ifcb_volume_analyzed_from_adc.R R/ifcb_summarize_biovolumes.R R/ifcb_correct_annotation.R R/ifcb_summarize_class_counts.R R/ifcb_download_test_data.R R/ifcb_psd.R R/ifcb_download_whoi_plankton.R R/ifcb_read_features.R R/ifcb_is_near_land.R R/ifcb_extract_pngs.R R/ifcb_match_taxa_names.R R/ifcb_create_empty_manual_file.R R/ifcb_count_mat_annotations.R R/ifcb_which_basin.R R/ifcb_extract_classified_images.R R/zzz.R R/ifcb_summarize_png_counts.R R/ifcb_is_diatom.R R/ifcb_get_mat_names.R R/ifcb_summarize_png_metadata.R R/ifcb_download_dashboard_data.R R/ifcb_extract_annotated_images.R R/ifcb_merge_manual.R R/ifcb_read_summary.R R/defunct.R R/ifcb_get_shark_colnames.R R/ifcb_get_runtime.R R/ifcb_adjust_classes.R R/ifcb_get_ecotaxa_example.R R/ifcb_create_class2use.R R/ifcb_replace_mat_values.R inst/doc/a-general-tutorial.R inst/doc/qc-tutorial.R inst/doc/qc-tutorial.Rmd inst/doc/a-general-tutorial.Rmd inst/shiny/ifcb_image_gallery/ui.R inst/shiny/ifcb_image_gallery/server.R inst/exdata/MATLAB-template.md inst/exdata/README-template.md tests/testthat.R tests/spelling.R tests/testthat/test-ifcb_read_summary.R tests/testthat/test-ifcb_summarize_png_counts.R tests/testthat/test-ifcb_get_shark_example.R tests/testthat/test-ifcb_is_diatom.R tests/testthat/test-ifcb_adjust_classes.R tests/testthat/test-ifcb_run_image_gallery.R tests/testthat/test-ifcb_extract_classified_images.R tests/testthat/test-ifcb_read_hdr_data.R tests/testthat/test-ifcb_extract_biovolumes.R tests/testthat/test-ifcb_extract_pngs.R tests/testthat/test-ifcb_summarize_biovolumes.R tests/testthat/test-ifcb_volume_analyzed.R tests/testthat/test-ifcb_which_basin.R tests/testthat/test-ifcb_replace_mat_values.R tests/testthat/test-ifcb_count_mat_annotations.R tests/testthat/test-ifcb_download_dashboard_data.R tests/testthat/test-ifcb_get_ecotaxa_example.R tests/testthat/test-ifcb_create_class2use.R tests/testthat/test-ifcb_annotate_batch.R tests/testthat/test-ifcb_get_mat_variable.R tests/testthat/test-ifcb_summarize_class_counts.R tests/testthat/test-ifcb_psd.R tests/testthat/test-ifcb_summarize_png_metadata.R tests/testthat/setup-venv.R tests/testthat/test-ifcb_get_mat_names.R tests/testthat/test-ifcb_get_ferrybox_data.R tests/testthat/test-ifcb_py_install.R tests/testthat/test-ifcb_psd_plot.R tests/testthat/test-ifcb_get_trophic_type.R tests/testthat/test-ifcb_get_runtime.R tests/testthat/test-ifcb_zip_matlab.R tests/testthat/test-ifcb_read_features.R tests/testthat/test-ifcb_prepare_whoi_plankton.R tests/testthat/test-ifcb_create_manifest.R tests/testthat/helper.R tests/testthat/test-ifcb_create_empty_manual_file.R tests/testthat/test-defunct.R tests/testthat/test-ifcb_extract_annotated_images.R tests/testthat/test-ifcb_download_whoi_plankton.R tests/testthat/test-ifcb_get_shark_colnames.R tests/testthat/test-ifcb_is_near_land.R tests/testthat/test-ifcb_convert_filenames.R tests/testthat/test-ifcb_is_in_basin.R tests/testthat/test-ifcb_download_test_data.R tests/testthat/test-ifcb_zip_pngs.R tests/testthat/test-ifcb_correct_annotation.R tests/testthat/test-ifcb_volume_analyzed_from_adc.R tests/testthat/test-ifcb_match_taxa_names.R tests/testthat/test-ifcb_merge_manual.R vignettes/qc-tutorial.Rmd vignettes/a-general-tutorial.Rmd man/create_package_manifest.Rd man/vol2C_lgdiatom.Rd man/iRfcb-package.Rd man/ifcb_summarize_png_counts.Rd man/ifcb_correct_annotation.Rd man/ifcb_is_near_land.Rd man/ifcb_annotate_batch.Rd man/ifcb_py_install.Rd man/ifcb_volume_analyzed.Rd man/read_hdr_file.Rd man/ifcb_get_shark_colnames.Rd man/split_large_zip.Rd man/defunct.Rd man/ifcb_extract_pngs.Rd man/ifcb_match_taxa_names.Rd man/ifcb_read_hdr_data.Rd man/ifcb_summarize_png_metadata.Rd man/ifcb_which_basin.Rd man/ifcb_convert_filenames.Rd man/ifcb_read_summary.Rd man/ifcb_psd_plot.Rd man/ifcb_extract_biovolumes.Rd man/vol2C_nondiatom.Rd man/ifcb_merge_manual.Rd man/ifcb_get_runtime.Rd man/ifcb_volume_analyzed_from_adc.Rd man/ifcb_run_image_gallery.Rd man/ifcb_prepare_whoi_plankton.Rd man/ifcb_create_empty_manual_file.Rd man/ifcb_zip_matlab.Rd man/ifcb_summarize_biovolumes.Rd man/ifcb_get_ecotaxa_example.Rd man/ifcb_read_mat.Rd man/ifcb_replace_mat_values.Rd man/ifcb_count_mat_annotations.Rd man/ifcb_is_diatom.Rd man/ifcb_download_whoi_plankton.Rd man/retrieve_worms_records.Rd man/ifcb_create_manifest.Rd man/process_ifcb_string.Rd man/ifcb_get_mat_variable.Rd man/ifcb_get_ferrybox_data.Rd man/ifcb_extract_classified_images.Rd man/ifcb_read_features.Rd man/summarize_TBclass.Rd man/ifcb_is_in_basin.Rd man/ifcb_zip_pngs.Rd man/ifcb_get_shark_example.Rd man/ifcb_get_mat_names.Rd man/ifcb_extract_annotated_images.Rd man/ifcb_adjust_classes.Rd man/ifcb_summarize_class_counts.Rd man/ifcb_psd.Rd man/ifcb_get_trophic_type.Rd man/ifcb_create_class2use.Rd man/ifcb_download_test_data.Rd man/ifcb_download_dashboard_data.Rd