Nothing
static_plot<-function(obj,dims=c(1,2),what=c(TRUE,TRUE),labs,pca=FALSE,contrib,binary){
# require(ggplot2)
#set to NULL to avoid compiler NOTE
x <- NULL
y <- NULL
ctr <- NULL
d1 = dims[1]
d2 = dims[2]
out = list()
if(pca==FALSE){
if (what[2] == TRUE) {
if (binary == TRUE) {
cc = dim(obj$colpcoord)[1]
attdf=data.frame(x=obj$colpcoord[seq(2,cc,2),d1],y=obj$colpcoord[seq(2,cc,2),d2],labs=labs,ctr=obj$colctr[seq(2,cc,2),d1],cor=obj$colcor[seq(2,cc,2),d1],mass=obj$colmass[seq(2,cc,2)])
} else {
attdf=data.frame(x=obj$colpcoord[,d1],y=obj$colpcoord[,d2],labs=labs,ctr=obj$colctr[,d1],cor=obj$colcor[,d1],mass=obj$colmass)
}
a=ggplot(data=attdf,aes(x=x,y=y))
a=a+geom_vline(xintercept=0)+geom_hline(yintercept=0)+theme_bw()
if (contrib == "none")
{
a=a+geom_text_repel(data=attdf,aes(label=labs))+ xlab("")+ylab("") + theme(legend.position="none")
}
if (contrib == "cor")
{
a=a+geom_text(data=attdf,aes(label=labs,size=cor))+ xlab("")+ylab("")#+ theme(legend.position="none")
}
if (contrib == "ctr")
{
a=a+geom_text(data=attdf,aes(label=labs,size=ctr))+ xlab("")+ylab("")#+ theme(legend.position="none")
}
if (is.null(obj$ff)) {
obj$ff = 0
}
if (obj$ff == 0) {
a=a+xlab(paste(round(obj$inertia.e[d1]*100,digits=2),"%",sep=""))
a=a+ylab(paste(round(obj$inertia.e[d2]*100,digits=2),"%",sep=""))
}
out$attributes=a
}
if (what[1] == TRUE) {
obsdf=data.frame(x=as.vector(obj$rowpcoord[,d1]),y=as.vector(obj$rowpcoord[,d2]),ctr=obj$rowctr[,d1],cor=obj$rowcor[,d1],mass=obj$rowmass)
b=ggplot(data=obsdf,aes(x=x,y=y))
b=b+geom_point(size=.5)+ xlab("")+ylab("")
b=b+geom_vline(xintercept=0)+geom_hline(yintercept=0)+theme_bw()
if (obj$ff == 0) {
b=b+xlab(paste(round(obj$inertia.e[d1]*100,digits=2),"%",sep=""))
b=b+ylab(paste(round(obj$inertia.e[d2]*100,digits=2),"%",sep=""))
}
out$objects=b
}
if ((what[1] == TRUE) & (what[2] == TRUE)) {
c=a+geom_point(data=obsdf,aes(x=x,y=y),colour="red",size=.5)+ylab("")
c=c+geom_vline(xintercept=0)+geom_hline(yintercept=0)+theme_bw()
if (obj$ff == 0) {
c=c+xlab(paste(round(obj$inertia.e[d1]*100,digits=2),"%",sep=""))
c=c+ylab(paste(round(obj$inertia.e[d2]*100,digits=2),"%",sep=""))
}
out$attributes=a
out$objects=b
out$all=c
}
return(out)
}else{
if (what[2] == TRUE) {
attdf=data.frame(x=obj$colpcoord[,d1],y=obj$colpcoord[,d2],labs=labs)#,ctr=obj$colctr[,1],cor=obj$colcor[,1])
cdf=circle_fun()
a=ggplot(data=attdf,aes(x=x,y=y))
a=a+geom_vline(xintercept=0)+geom_hline(yintercept=0)+theme_bw()
a=a+geom_text_repel(data=attdf,aes(label=labs),segment.color="lightgrey")+ xlab("")+ylab("") #,size=ctr
a=a+geom_point(data=cdf,aes(x=x,y=y),size=.05)
a=a+geom_segment(data=attdf,aes(x=0,xend=x,y=0,yend=y),size=.5,alpha=.5)
a=a+xlab(paste(round(obj$inertia.e[d1]*100,digits=2),"%",sep=""))
a=a+ylab(paste(round(obj$inertia.e[d2]*100,digits=2),"%",sep=""))
out$attributes=a
}
if (what[1] == TRUE) {
obsdf=data.frame(x=obj$rowpcoord[,d1],y=obj$rowpcoord[,d2])#,ctr=obj$rowctr[,1],cor=obj$rowcor[,1])
b=ggplot(data=obsdf,aes(x=x,y=y))
b=b+geom_vline(xintercept=0)+geom_hline(yintercept=0)+theme_bw()
b=b+geom_point(size=.5)+ xlab("")+ylab("")
b=b+xlab(paste(round(obj$inertia.e[d1]*100,digits=2),"%",sep=""))
b=b+ylab(paste(round(obj$inertia.e[d2]*100,digits=2),"%",sep=""))
out$objects=b
}
return(out)
}
}
circle_fun <- function(center = c(0,0),radius = 1, npoints = 1000){
r = radius
tt <- seq(0,2*pi,length.out = npoints)
xx <- center[1] + r * cos(tt)
yy <- center[2] + r * sin(tt)
return(data.frame(x = xx, y = yy))
}
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