Genome-wide gene insertion and deletion rates can be modelled in a maximum
likelihood framework with the additional flexibility of modelling potential missing
data using the models included within. These models simultaneously estimate insertion
and deletion (indel) rates of gene families and proportions of "missing" data for
(multiple) taxa of interest. The likelihood framework is utilized for parameter
estimation. A phylogenetic tree of the taxa and gene presence/absence patterns
(with data ordered by the tips of the tree) are required. See Dang et al.
|Author||Utkarsh J. Dang and G. Brian Golding|
|Date of publication||2018-01-30 18:41:18 UTC|
|Maintainer||Utkarsh J. Dang <[email protected]>|
|License||GPL (>= 2)|
|Package repository||View on CRAN|
Install the latest version of this package by entering the following in R:
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.