plotrates: Plot estimates for insertion and deletion rates

In indelmiss: Insertion Deletion Analysis While Accounting for Possible Missing Data

Plot estimates for insertion and deletion rates

Description

Plotting command for use on an object of class "indelmiss".

Usage

plotrates(x, model, ci = TRUE, cil = 95, ...)

Arguments

x	An object of class "indelmiss".
model	One of "M1", "M2", "M3", or "M4".
ci	TRUE plots confidence intervals around the estimates.
cil	Confidence interval level.
...	Any further commands to plot.

Value

Plot estimates for insertion and deletion rates. Called by plot.indelmiss.

Author(s)

Utkarsh J. Dang and G. Brian Golding

[e-mail]

See Also

See also plot.indelmiss.

Examples

indel <- indelrates(datasource = "simulation", seed = 1, taxa = 5,
             mu = 1, nu = 5, phyl = 5000,  pmiss = 0, toi = 1, 
             bgtype="ancestornodes", bg = c(7, 9), 
             zerocorrection = TRUE, 
             modelnames = c("M1", "M2", "M3", "M4"),
             optmethod = "nlminb")
print(indel)
plotrates(indel, model="M4") 

indelmiss documentation built on Sept. 15, 2023, 5:16 p.m.