plotp: Plot estimates for the parameter that accounts for possible...

In indelmiss: Insertion Deletion Analysis While Accounting for Possible Missing Data

Plot estimates for the parameter that accounts for possible missing data

Description

Plotting command for use on an object of class "indelmiss".

Usage

plotp(x, model, ci = TRUE, cil = 95, ...)

Arguments

x	An object of class "indelmiss".
model	One of "M2" or "M4".
ci	TRUE plots confidence intervals around the estimates.
cil	Confidence interval level.
...	Any further commands to plot.

Value

Plot estimates for the parameter that accounts for possible missing data. Called by plot.indelmiss.

Author(s)

Utkarsh J. Dang and G. Brian Golding

[e-mail]

See Also

See also plot.indelmiss.

Examples

indel <- indelrates(datasource = "simulation", seed = 1, taxa = 5,
             mu = 1, nu = 5, phyl = 5000,  pmiss = 0, toi = 1, 
             bgtype="ancestornodes", bg = c(7, 9), 
             zerocorrection = TRUE, rootprob = "stationary", 
             modelnames = c("M1", "M2", "M3", "M4"),
             optmethod = "nlminb")
print(indel)
plotp(indel, model="M4") 

indelmiss documentation built on Sept. 15, 2023, 5:16 p.m.