Plotting command for use on an object of class "indelmiss". Will draw two plots: one with the estimates for the rates and the other for the "missingness" parameter. plot.indelmiss() calls plotp and plotrates.

1 2 |

`x` |
An object of class "indelmiss". |

`model` |
One of "M1", "M2", "M3", or "M4". |

`ci` |
TRUE plots confidence intervals around the estimates. |

`cil` |
Confidence interval level. |

`...` |
Any further commands to plot. |

Utkarsh J. Dang and G. Brian Golding

See also `indelrates`

, `plotrates`

and `plotp`

.

1 2 3 4 5 6 7 8 | ```
#indel <- indelrates(datasource = "simulation", seed = 1, taxa = 5,
# mu = 1, nu = 5, phyl = 5000, nmiss = 0, toi = 1,
# bgtype="ancestornodes", bg = c(7, 9),
# zerocorrection = TRUE, rootprob="maxlik",
# modelnames = c("M1", "M2", "M3", "M4"),
# optmethod = "nlminb")
#print(indel)
#plot(indel, model="M4")
``` |

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