mycobacteriumdata1: Mycobacterium data phyletic data (gene family memberships)...

In indelmiss: Insertion Deletion Analysis While Accounting for Possible Missing Data

Mycobacterium data phyletic data (gene family memberships) and tree

Description

Gene family memberships and a phylogenetic tree for ten species from the genus Mycobacterium.

Usage

data("mycobacteriumdata1")

Format

Contains a list that comprises a tree (called "tree") and phyletic gene family membership data (called "phyl") as its components. The tree is in the ape package phylo format. The data component consists of a data frame of 0/1 patterns with the different patterns as the rows and the 10 taxa as the columns. An entry of 1 (0) describe gene presence (absence) in the taxa.

References

O'Neill, M. B., T. D. Mortimer, and C. S. Pepperell (2015). Diversity of mycobacterium tuberculosis across evolutionary scales. PLoS Pathogens 11(11), e1005257.

Examples

data(mycobacteriumdata1)

indelmiss documentation built on Sept. 15, 2023, 5:16 p.m.