Files in inferCSN
Inferring Cell-Specific Gene Regulatory Network
MD5
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/RcppExports.R
R/plotting_functions.R
R/data.R
R/subsampling.R
R/network_sift.R
R/sparse_regression_model.R
R/single_network.R
R/import.R
R/network_visualization.R
R/inferCSN.R
R/meta_cells.R
R/calculate_gene_rank.R
R/inferCSN-package.R
R/network_evaluation.R
R/utils.R
src/table_to_matrix.cpp
src/Makevars.win
src/Makevars
src/network_format.cpp
src/CDL012Swaps.cpp
src/RcppExports.cpp
src/Grid.cpp
src/BetaVector.cpp
src/Normalize.cpp
src/Interface.cpp
src/Test_Interface.cpp
src/filter_sort_matrix.cpp
src/utils.cpp
src/split_indices.cpp
src/CDL012SquaredHingeSwaps.cpp
src/network_evaluation.cpp
src/matrix_to_table.cpp
src/asMatrix.cpp
src/Grid1D.cpp
src/weight_sift.cpp
src/Grid2D.cpp
src/CDL012LogisticSwaps.cpp
src/include/Interface.h
src/include/CDL012SquaredHingeSwaps.h
src/include/CDL012SquaredHinge.h
src/include/Test_Interface.h
src/include/MakeCD.h
src/include/GridParams.h
src/include/Model.h
src/include/CDL012Swaps.h
src/include/Normalize.h
src/include/CDL012Logistic.h
src/include/CDL012.h
src/include/CD.h
src/include/Params.h
src/include/Grid1D.h
src/include/CDL0.h
src/include/CDL012LogisticSwaps.h
src/include/utils.h
src/include/BetaVector.h
src/include/Grid.h
src/include/CDSwaps.h
src/include/FitResult.h
src/include/Grid2D.h
src/include/network_format.h
inst/CITATION
data/example_ground_truth.rda
data/example_matrix.rda
data/example_meta_data.rda
man/plot_static_networks.Rd
man/log_message.Rd
man/fit_srm.Rd
man/sparse_cov_cor.Rd
man/calculate_ji.Rd
man/plot_histogram.Rd
man/plot_all_metrics.Rd
man/table_to_matrix.Rd
man/predict.srm.Rd
man/print.srm.Rd
man/plot_coefficients.Rd
man/filter_sort_matrix.Rd
man/example_matrix.Rd
man/grapes-ss-grapes.Rd
man/weight_sift.Rd
man/coef.srm.Rd
man/calculate_accuracy.Rd
man/plot_edges_comparison.Rd
man/r_square.Rd
man/plot_network_heatmap.Rd
man/prepare_binary_predictions.Rd
man/network_format.Rd
man/calculate_metrics.Rd
man/calculate_gene_rank.Rd
man/split_indices.Rd
man/calculate_f1.Rd
man/example_ground_truth.Rd
man/meta_cells.Rd
man/example_meta_data.Rd
man/calculate_auprc.Rd
man/sparse_regression.Rd
man/calculate_auc.Rd
man/calculate_recall.Rd
man/plot_dynamic_networks.Rd
man/network_sift.Rd
man/plot_coefficient.Rd
man/calculate_auroc.Rd
man/pearson_correlation.Rd
man/normalization.Rd
man/plot_contrast_networks.Rd
man/parallelize_fun.Rd
man/calculate_precision.Rd
man/single_network.Rd
man/matrix_to_table.Rd
man/subsampling.Rd
man/inferCSN.Rd
man/check_sparsity.Rd
man/sparse_cor.Rd
man/calculate_si.Rd
man/simulate_sparse_matrix.Rd
man/plot_embedding.Rd
man/inferCSN-package.Rd
man/as_matrix.Rd
man/plot_scatter.Rd
man/figures/inferCSN.svg
man/figures/logo.svg
