network_format: Format network table

In inferCSN: Inferring Cell-Specific Gene Regulatory Network

Format network table

Description

Format network table

Usage

network_format(
  network_table,
  regulators = NULL,
  targets = NULL,
  abs_weight = TRUE
)

Arguments

network_table	The weight data table of network.
regulators	Regulators list.
targets	Targets list.
abs_weight	Logical value, default is TRUE, whether to perform absolute value on weights, and when set abs_weight to TRUE, the output of weight table will create a new column named Interaction.

Value

Formated network table

Examples

data("example_matrix")
network_table <- inferCSN(example_matrix)

network_format(
  network_table,
  regulators = c("g1")
)

network_format(
  network_table,
  regulators = c("g1"),
  abs_weight = FALSE
)

network_format(
  network_table,
  targets = c("g3")
)

network_format(
  network_table,
  regulators = c("g1", "g3"),
  targets = c("g3", "g5")
)

inferCSN documentation built on Sept. 11, 2024, 9:32 p.m.