calculate_auc: Calculate AUC Metrics

In inferCSN: Inferring Cell-Specific Gene Regulatory Network

Calculate AUC Metrics

Description

Calculates AUROC and AUPRC metrics with optional visualization

Usage

calculate_auc(
  network_table,
  ground_truth,
  return_plot = FALSE,
  line_color = "#1563cc",
  line_width = 1,
  tag_levels = "A"
)

Arguments

network_table	A data frame of predicted network structure
ground_truth	A data frame of ground truth network
return_plot	Logical value indicating whether to generate plots
line_color	Color for plot lines
line_width	Width for plot lines
tag_levels	Tag levels for plot annotations

Value

A list containing metrics and optional plots

Examples

data("example_matrix")
data("example_ground_truth")
network_table <- inferCSN(example_matrix)
calculate_auc(
  network_table,
  example_ground_truth,
  return_plot = TRUE
)

inferCSN documentation built on April 13, 2025, 5:11 p.m.