calculate_gene_rank: Rank TFs and genes in network

In inferCSN: Inferring Cell-Specific Gene Regulatory Network

Rank TFs and genes in network

Description

Rank TFs and genes in network

Usage

calculate_gene_rank(
  network_table,
  regulators = NULL,
  targets = NULL,
  directed = FALSE
)

Arguments

network_table	The weight data table of network.
regulators	Regulators list.
targets	Targets list.
directed	Whether the network is directed.

Value

A table of gene rank.

Examples

data("example_matrix")
network_table <- inferCSN(example_matrix)
head(calculate_gene_rank(network_table))
head(calculate_gene_rank(network_table, regulators = "g1"))
head(calculate_gene_rank(network_table, targets = "g1"))

inferCSN documentation built on Sept. 11, 2024, 9:32 p.m.