matrix_to_table: Switch matrix to network table

In inferCSN: Inferring Cell-Specific Gene Regulatory Network

Switch matrix to network table

Description

Switch matrix to network table

Usage

matrix_to_table(
  network_matrix,
  regulators = NULL,
  targets = NULL,
  threshold = 0
)

Arguments

network_matrix	The matrix of network weight.
regulators	Character vector of regulator names to filter by.
targets	Character vector of target names to filter by.
threshold	The threshold for filtering weights based on absolute values, defaults to 0.

Value

Network table

Examples

data("example_matrix")
network_table <- inferCSN(example_matrix)
network_matrix <- table_to_matrix(network_table)
network_table_new <- matrix_to_table(network_matrix)
head(network_table)
head(network_table_new)
identical(
  network_table,
  network_table_new
)

matrix_to_table(
  network_matrix,
  threshold = 0.8
)

matrix_to_table(
  network_matrix,
  regulators = c("g1", "g2"),
  targets = c("g3", "g4")
)

inferCSN documentation built on April 13, 2025, 5:11 p.m.