Files in inferCSN

Inferring Cell-Specific Gene Regulatory Network

MD5

README.md

NAMESPACE

DESCRIPTION

LICENSE

R/RcppExports.R R/plotting_functions.R R/data.R R/network_sift.R R/performance_evaluation.R R/import.R R/network_visualization.R R/inferCSN.R R/sparse_regression.R R/calculate_gene_rank.R R/inferCSN-package.R R/utils.R

src/Makevars.win

src/Makevars

src/tableToMatrix.cpp

src/CDL012Swaps.cpp

src/RcppExports.cpp

src/Grid.cpp

src/BetaVector.cpp

src/Normalize.cpp

src/Interface.cpp

src/Test_Interface.cpp

src/utils.cpp

src/README.cpp

src/CDL012SquaredHingeSwaps.cpp

src/asMatrix.cpp

src/Grid1D.cpp

src/Grid2D.cpp

src/CDL012LogisticSwaps.cpp

src/include/Interface.h

src/include/CDL012SquaredHingeSwaps.h

src/include/CDL012SquaredHinge.h

src/include/Test_Interface.h

src/include/MakeCD.h

src/include/GridParams.h

src/include/Model.h

src/include/CDL012Swaps.h

src/include/Normalize.h

src/include/CDL012Logistic.h

src/include/CDL012.h

src/include/CD.h

src/include/Params.h

src/include/Grid1D.h

src/include/CDL0.h

src/include/CDL012LogisticSwaps.h

src/include/utils.h

src/include/BetaVector.h

src/include/Grid.h

src/include/CDSwaps.h

src/include/FitResult.h

src/include/Grid2D.h

data/example_ground_truth.rda

data/example_matrix.rda

data/example_meta_data.rda

man/plot_static_networks.Rd man/log_message.Rd man/plot_weight_distribution.Rd man/table_to_matrix.Rd man/predict.srm.Rd man/print.srm.Rd man/filter_sort_matrix.Rd man/calculate_acc.Rd man/example_matrix.Rd man/coef.srm.Rd man/r_square.Rd man/plot_network_heatmap.Rd man/network_format.Rd man/calculate_gene_rank.Rd man/example_ground_truth.Rd man/example_meta_data.Rd man/sparse_regression.Rd man/calculate_auc.Rd man/plot_dynamic_networks.Rd man/network_sift.Rd man/normalization.Rd man/plot_contrast_networks.Rd man/parallelize_fun.Rd man/single_network.Rd man/inferCSN.Rd man/check_sparsity.Rd man/fit_sparse_regression.Rd man/plot_embedding.Rd man/inferCSN-package.Rd man/as_matrix.Rd man/plot_scatter.Rd

man/figures/inferCSN.svg

man/figures/logo.svg

inferCSN documentation built on Sept. 11, 2024, 9:32 p.m.