Files in inferCSN

Inferring Cell-Specific Gene Regulatory Network

MD5

README.md

NAMESPACE

DESCRIPTION

LICENSE

R/RcppExports.R R/data.R R/compute.gene.rank.R R/sparse.regression.R R/auc.calculate.R R/network.visualization.R R/inferCSN.R R/inferCSN-package.R R/utils.R

src/Makevars.win

src/Makevars

src/DT2Matrix.cpp

src/CDL012Swaps.cpp

src/RcppExports.cpp

src/Grid.cpp

src/BetaVector.cpp

src/Normalize.cpp

src/Interface.cpp

src/Test_Interface.cpp

src/utils.cpp

src/CDL012SquaredHingeSwaps.cpp

src/Grid1D.cpp

src/Grid2D.cpp

src/CDL012LogisticSwaps.cpp

src/include/Interface.h

src/include/CDL012SquaredHingeSwaps.h

src/include/CDL012SquaredHinge.h

src/include/Test_Interface.h

src/include/MakeCD.h

src/include/GridParams.h

src/include/Model.h

src/include/CDL012Swaps.h

src/include/Normalize.h

src/include/CDL012Logistic.h

src/include/CDL012.h

src/include/CD.h

src/include/Params.h

src/include/Grid1D.h

src/include/CDL0.h

src/include/CDL012LogisticSwaps.h

src/include/utils.h

src/include/BetaVector.h

src/include/Grid.h

src/include/CDSwaps.h

src/include/FitResult.h

src/include/Grid2D.h

tests/testthat.R tests/testthat/test-inferCSN.R

data/exampleGroundTruth.rda

data/exampleMatrix.rda

man/coef.inferCSN.Rd man/sparse.regression.Rd man/compute.gene.rank.Rd man/exampleGroundTruth.Rd man/network.heatmap.Rd man/exampleMatrix.Rd man/check.parameters.Rd man/acc.calculate.Rd man/is.scalar.Rd man/auc.calculate.Rd man/predict.inferCSN.Rd man/net.format.Rd man/contrast.networks.Rd man/inferCSN.Rd man/sub.inferCSN.Rd man/dynamic.networks.Rd man/inferCSN-package.Rd man/print.inferCSN.Rd man/inferCSN.fit.Rd

man/figures/inferCSN.svg

inferCSN documentation built on Nov. 2, 2023, 6:27 p.m.