as_matrix | Convert dgCMatrix into a dense matrix |
calculate_acc | Calculate accuracy value |
calculate_auc | Calculate AUPRC and AUROC values |
calculate_gene_rank | Rank TFs and genes in network |
check_sparsity | Check sparsity of matrix |
coef.srm | Extracts a specific solution in the regularization path |
example_ground_truth | Example ground truth data |
example_matrix | Example matrix data |
example_meta_data | Example meta data |
filter_sort_matrix | Filter and sort matrix |
fit_sparse_regression | Fit a sparse regression model |
inferCSN | *infer*ring *C*ell-*S*pecific gene regulatory *N*etwork |
inferCSN-package | _*inferCSN*_: *infer*ring *C*ell-*S*pecific gene regulatory... |
log_message | Print diagnostic message |
network_format | Format network table |
network_sift | Sifting network |
normalization | Normalize numeric vector |
parallelize_fun | Parallelize a function |
plot_contrast_networks | Plot contrast networks |
plot_dynamic_networks | Plot dynamic networks |
plot_embedding | Plot embedding |
plot_network_heatmap | Plot network heatmap |
plot_scatter | Plot expression data in a scatter plot |
plot_static_networks | Plot dynamic networks |
plot_weight_distribution | Plot weight distribution |
predict.srm | Predicts response for a given sample |
print.srm | Prints a summary of 'fit_sparse_regression' |
r_square | R^2 (coefficient of determination) |
single_network | Construct network for single target gene |
sparse_regression | Sparse regression model |
table_to_matrix | Switch network table to matrix |
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