inlabru
Bayesian Latent Gaussian Modelling using INLA and Extensions

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inlabru: Bayesian Latent Gaussian Modelling using INLA and Extensions
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API for inlabru
Bayesian Latent Gaussian Modelling using INLA and Extensions

Global functions
.onLoad Source code
E_nc1 Man page
E_nc2 Man page
E_nc3a Man page
E_nc3b Man page
Poisson1_1D Man page
Poisson2_1D Man page
Poisson3_1D Man page
[.bm_list Man page
[.bru_like_list Man page
[.bru_log Man page
[.bru_mapper_collect Man page
[.bru_mapper_multi Man page
[.comp_simple_list Man page
[.component_list Man page
`[.bm_list` Source code
`[.bru_like_list` Source code
`[.bru_log` Source code
`[.bru_mapper_collect` Source code
`[.bru_mapper_multi` Source code
`[.comp_simple_list` Source code
`[.component_list` Source code
`c.bm_list` Source code
`c.bru_log` Source code
`c.bru_mapper` Source code
`c.component_list` Source code
`c.component` Source code
`ibm_names.bru_mapper_collect` Source code
`ibm_names.bru_mapper_multi` Source code
`ibm_names<-.bru_mapper_collect` Source code
`ibm_names<-.bru_mapper_multi` Source code
`ibm_names<-` Source code
`length.bru_log` Source code
add_mapper Source code
add_mappers Man page Source code
add_mappers.component Man page Source code
add_mappers.component_list Man page Source code
as.bru_options Man page Source code
as.character.bru_log Man page Source code
bincount Man page Source code
bm_collect_indexing Source code
bm_collect_sub_lin Source code
bm_list Man page
bm_multi_indexing Source code
bru Man page Source code
bru.pal Source code
bru_call_options Man page Source code
bru_check_object_bru Source code
bru_component Man page
bru_component_list Man page
bru_compute_linearisation Man page Source code
bru_compute_linearisation.bru_like Man page Source code
bru_compute_linearisation.bru_like_list Man page Source code
bru_compute_linearisation.bru_model Man page Source code
bru_compute_linearisation.component Man page Source code
bru_convergence_plot Man page Source code
bru_env_get Man page Source code
bru_fill_missing Man page Source code
bru_forward_transformation Man page Source code
bru_get_mapper Man page Source code
bru_get_mapper.inla.rgeneric Man page Source code
bru_get_mapper.inla.spde Man page Source code
bru_get_mapper_safely Man page Source code
bru_info Man page Source code
bru_info.bru Man page Source code
bru_info.character Man page Source code
bru_info_upgrade Source code
bru_inla.stack.mexpand Man page Source code
bru_inla.stack.mjoin Man page Source code
bru_input Source code
bru_int_polygon Man page Source code
bru_inverse_transformation Man page Source code
bru_like_control_family Man page Source code
bru_like_control_family.bru_like Man page Source code
bru_like_control_family.bru_like_list Man page Source code
bru_like_expr Source code
bru_like_inla_family Man page Source code
bru_like_inla_family.bru_like Man page Source code
bru_like_inla_family.bru_like_list Man page Source code
bru_line_search Source code
bru_log Man page Source code
bru_log.bru Man page Source code
bru_log.bru_log Man page Source code
bru_log.character Man page Source code
bru_log.iinla Man page Source code
bru_log_bookmark Man page Source code
bru_log_bookmarks Man page Source code
bru_log_index Man page Source code
bru_log_message Man page Source code
bru_log_new Man page Source code
bru_log_offset Man page Source code
bru_log_reset Man page Source code
bru_make_stack Man page Source code
bru_make_stack.bru_like Man page Source code
bru_make_stack.bru_like_list Man page Source code
bru_mapper Man page Source code
bru_mapper.default Man page Source code
bru_mapper.fm_mesh_1d Man page Source code
bru_mapper.fm_mesh_2d Man page Source code
bru_mapper.inla.mesh Man page Source code
bru_mapper.inla.mesh.1d Man page Source code
bru_mapper_aggregate Man page Source code
bru_mapper_collect Man page Source code
bru_mapper_const Man page Source code
bru_mapper_define Man page Source code
bru_mapper_factor Man page Source code
bru_mapper_generics Man page
bru_mapper_harmonics Man page Source code
bru_mapper_index Man page Source code
bru_mapper_linear Man page Source code
bru_mapper_logsumexp Man page Source code
bru_mapper_marginal Man page Source code
bru_mapper_matrix Man page Source code
bru_mapper_mesh_B Man page Source code
bru_mapper_multi Man page Source code
bru_mapper_multi_prepare_input Source code
bru_mapper_offset Man page Source code
bru_mapper_pipe Man page Source code
bru_mapper_scale Man page Source code
bru_mapper_shift Man page Source code
bru_mapper_taylor Man page Source code
bru_model Man page Source code
bru_options Man page Source code
bru_options_bru Source code
bru_options_check Man page Source code
bru_options_default Man page Source code
bru_options_deprecated Source code
bru_options_get Man page Source code
bru_options_inla Source code
bru_options_reset Man page Source code
bru_options_set Man page Source code
bru_rerun Man page Source code
bru_safe_inla Man page Source code
bru_safe_sp Man page Source code
bru_standardise_names Man page Source code
bru_subcomponent Source code
bru_summarise Man page Source code
bru_timings Man page Source code
bru_timings.bru Man page Source code
bru_timings_plot Man page Source code
bru_transformation Man page
bru_used Man page Source code
bru_used.bru Man page Source code
bru_used.bru_like Man page Source code
bru_used.bru_used Man page Source code
bru_used.character Man page Source code
bru_used.default Man page Source code
bru_used.expression Man page Source code
bru_used.formula Man page Source code
bru_used.list Man page Source code
bru_used_update Man page Source code
bru_used_update.bru_like Man page Source code
bru_used_update.bru_like_list Man page Source code
bru_used_update.bru_used Man page Source code
bru_used_upgrade Source code
bru_used_vars Man page Source code
bru_used_vars.character Man page Source code
bru_used_vars.expression Man page Source code
bru_used_vars.formula Man page Source code
c.bm_list Man page
c.bru_like Man page Source code
c.bru_like_list Man page Source code
c.bru_log Man page
c.bru_mapper Man page
c.component Man page
c.component_list Man page
check_layer Source code
check_package_version_and_load Source code
check_spatstat Source code
code.components Man page Source code
comp_lin_eval Man page Source code
comp_lin_eval.component Man page Source code
comp_lin_eval.component_list Man page Source code
complete_coordnames Source code
component Man page Source code
component.character Man page Source code
component_eval Man page Source code
component_list Man page Source code
component_list.formula Man page Source code
component_list.list Man page Source code
countdata1 Man page
countdata2 Man page
countdata3a Man page
countdata3b Man page
cov2_1D Man page
cprod Man page Source code
deltaIC Man page Source code
devel.cvmeasure Man page Source code
eval_in_data_context Man page Source code
eval_spatial Man page Source code
eval_spatial.SpatRaster Man page Source code
eval_spatial.SpatialGridDataFrame Man page Source code
eval_spatial.SpatialPixelsDataFrame Man page Source code
eval_spatial.SpatialPolygonsDataFrame Man page Source code
eval_spatial.sf Man page Source code
eval_spatial.stars Man page Source code
eval_spatial_Spatial Source code
evaluate_comp_lin Man page Source code
evaluate_comp_simple Man page Source code
evaluate_comp_simple.bru_model Man page Source code
evaluate_comp_simple.component_list Man page Source code
evaluate_effect_multi_state Man page Source code
evaluate_effect_multi_state.comp_simple_list Man page Source code
evaluate_effect_multi_state.component_list Man page Source code
evaluate_effect_single_state Man page Source code
evaluate_effect_single_state.bru_mapper Man page Source code
evaluate_effect_single_state.comp_simple_list Man page Source code
evaluate_effect_single_state.component_list Man page Source code
evaluate_index Man page Source code
evaluate_inputs Man page Source code
evaluate_model Man page Source code
evaluate_predictor Man page Source code
evaluate_state Man page Source code
expand_labels Man page Source code
expand_to_dataframe Source code
extended_bind_rows Source code
extract_entries Source code
extract_layer Source code
extract_matrixlist_column Source code
extract_property Man page Source code
extract_selector Source code
extract_vectorlist_column Source code
fm_CRS Man page
fm_CRS_as_list Man page
fm_CRSargs Man page
fm_CRSargs_as_list Man page
fm_as_fm Man page
fm_as_inla_mesh Man page
fm_as_inla_mesh_segment Man page
fm_as_lattice_2d Man page
fm_as_mesh_1d Man page
fm_as_mesh_2d Man page
fm_as_segm Man page
fm_as_sfc Man page
fm_as_sp_crs Man page
fm_centroids Man page
fm_contains Man page
fm_cprod Man page
fm_crs Man page
fm_crs_get_ellipsoid_radius Man page
fm_crs_get_lengthunit Man page
fm_crs_get_wkt Man page
fm_crs_is_geocent Man page
fm_crs_is_identical Man page
fm_crs_oblique Man page
fm_crs_oblique<- Man page
fm_crs_set_ellipsoid_radius Man page
fm_crs_set_lengthunit Man page
fm_ellipsoid_radius Man page
fm_ellipsoid_radius<- Man page
fm_evaluate Man page
fm_evaluator Man page
fm_evaluator_lattice Man page
fm_has_PROJ6 Man page
fm_identical_CRS Man page
fm_int Man page
fm_int_multi_sampler Man page
fm_is_within Man page
fm_lattice_2d Man page
fm_length_unit Man page
fm_length_unit<- Man page
fm_list_as_CRS Man page
fm_mesh_1d Man page
fm_mesh_2d Man page
fm_pixels Man page
fm_proj4string Man page
fm_segm Man page
fm_sp2segment Man page
fm_spTransform Man page
fm_sp_get_crs Man page
fm_store_points Man page
fm_transform Man page
fm_vertices Man page
fm_wkt Man page
fm_wkt_as_wkt_tree Man page
fm_wkt_get_ellipsoid_radius Man page
fm_wkt_get_lengthunit Man page
fm_wkt_is_geocent Man page
fm_wkt_predef Man page
fm_wkt_set_ellipsoid_radius Man page
fm_wkt_set_lengthunit Man page
fm_wkt_tree_as_wkt Man page
fm_wkt_tree_get_item Man page
fm_wkt_tree_set_item Man page
fm_wkt_unit_params Man page
generate Man page Source code
generate.bru Man page Source code
gg Man page Source code
gg.RasterLayer Man page Source code
gg.SpatRaster Man page Source code
gg.SpatialGridDataFrame Man page Source code
gg.SpatialLines Man page Source code
gg.SpatialPixels Man page Source code
gg.SpatialPixelsDataFrame Man page Source code
gg.SpatialPoints Man page Source code
gg.SpatialPolygons Man page Source code
gg.bru_prediction Man page Source code
gg.data.frame Man page Source code
gg.fm_mesh_1d Man page Source code
gg.fm_mesh_2d Man page Source code
gg.inla.mesh Man page
gg.inla.mesh.1d Man page
gg.matrix Man page Source code
gg.prediction Man page Source code
gg.sf Man page Source code
globe Man page Source code
glplot Man page Source code
glplot.SpatialLines Man page Source code
glplot.SpatialPoints Man page Source code
glplot.fm_mesh_2d Man page Source code
glplot.inla.mesh Man page Source code
gm Man page Source code
gmap Man page Source code
gorillas Man page
gorillas_sf Man page
gorillas_sf_gcov Man page Source code
ibm_eval Man page Source code
ibm_eval.bru_mapper_aggregate Man page Source code
ibm_eval.bru_mapper_collect Man page Source code
ibm_eval.bru_mapper_const Man page Source code
ibm_eval.bru_mapper_logsumexp Man page Source code
ibm_eval.bru_mapper_marginal Man page Source code
ibm_eval.bru_mapper_multi Man page Source code
ibm_eval.bru_mapper_pipe Man page Source code
ibm_eval.bru_mapper_scale Man page Source code
ibm_eval.bru_mapper_shift Man page Source code
ibm_eval.bru_mapper_taylor Man page Source code
ibm_eval.default Man page Source code
ibm_eval2 Man page Source code
ibm_eval2.bru_mapper_pipe Man page Source code
ibm_eval2.default Man page Source code
ibm_inla_subset Man page Source code
ibm_inla_subset.default Man page Source code
ibm_invalid_output Man page Source code
ibm_invalid_output.bru_mapper_collect Man page Source code
ibm_invalid_output.bru_mapper_index Man page Source code
ibm_invalid_output.bru_mapper_multi Man page Source code
ibm_invalid_output.default Man page Source code
ibm_is_linear Man page Source code
ibm_is_linear.bru_mapper_collect Man page Source code
ibm_is_linear.bru_mapper_multi Man page Source code
ibm_is_linear.default Man page Source code
ibm_jacobian Man page Source code
ibm_jacobian.bru_mapper_aggregate Man page Source code
ibm_jacobian.bru_mapper_collect Man page Source code
ibm_jacobian.bru_mapper_const Man page Source code
ibm_jacobian.bru_mapper_factor Man page Source code
ibm_jacobian.bru_mapper_fm_mesh_1d Man page Source code
ibm_jacobian.bru_mapper_fm_mesh_2d Man page Source code
ibm_jacobian.bru_mapper_harmonics Man page Source code
ibm_jacobian.bru_mapper_index Man page Source code
ibm_jacobian.bru_mapper_inla_mesh_1d Man page Source code
ibm_jacobian.bru_mapper_inla_mesh_2d Man page Source code
ibm_jacobian.bru_mapper_linear Man page Source code
ibm_jacobian.bru_mapper_logsumexp Man page Source code
ibm_jacobian.bru_mapper_marginal Man page Source code
ibm_jacobian.bru_mapper_matrix Man page Source code
ibm_jacobian.bru_mapper_mesh_B Man page Source code
ibm_jacobian.bru_mapper_multi Man page Source code
ibm_jacobian.bru_mapper_pipe Man page Source code
ibm_jacobian.bru_mapper_scale Man page Source code
ibm_jacobian.bru_mapper_shift Man page Source code
ibm_jacobian.bru_mapper_taylor Man page Source code
ibm_jacobian.default Man page Source code
ibm_linear Man page Source code
ibm_linear.bru_mapper_collect Man page Source code
ibm_linear.bru_mapper_multi Man page Source code
ibm_linear.default Man page Source code
ibm_n Man page Source code
ibm_n.bru_mapper_aggregate Man page Source code
ibm_n.bru_mapper_collect Man page Source code
ibm_n.bru_mapper_const Man page Source code
ibm_n.bru_mapper_factor Man page Source code
ibm_n.bru_mapper_fm_mesh_1d Man page Source code
ibm_n.bru_mapper_fm_mesh_2d Man page Source code
ibm_n.bru_mapper_harmonics Man page Source code
ibm_n.bru_mapper_inla_mesh_1d Man page Source code
ibm_n.bru_mapper_inla_mesh_2d Man page Source code
ibm_n.bru_mapper_linear Man page Source code
ibm_n.bru_mapper_marginal Man page Source code
ibm_n.bru_mapper_matrix Man page Source code
ibm_n.bru_mapper_mesh_B Man page Source code
ibm_n.bru_mapper_multi Man page Source code
ibm_n.bru_mapper_pipe Man page Source code
ibm_n.bru_mapper_scale Man page Source code
ibm_n.bru_mapper_shift Man page Source code
ibm_n.bru_mapper_taylor Man page Source code
ibm_n.default Man page Source code
ibm_n_output Man page Source code
ibm_n_output.bru_mapper_aggregate Man page Source code
ibm_n_output.bru_mapper_collect Man page Source code
ibm_n_output.bru_mapper_marginal Man page Source code
ibm_n_output.bru_mapper_multi Man page Source code
ibm_n_output.bru_mapper_pipe Man page Source code
ibm_n_output.bru_mapper_scale Man page Source code
ibm_n_output.bru_mapper_shift Man page Source code
ibm_n_output.bru_mapper_taylor Man page Source code
ibm_n_output.default Man page Source code
ibm_names Man page Source code
ibm_names.bru_mapper_collect Man page
ibm_names.bru_mapper_multi Man page
ibm_names.default Man page Source code
ibm_names<- Man page
ibm_names<-.bru_mapper_collect Man page
ibm_names<-.bru_mapper_multi Man page
ibm_shortname Source code
ibm_simplify Man page Source code
ibm_simplify.bru_mapper_pipe Man page Source code
ibm_simplify.default Man page Source code
ibm_values Man page Source code
ibm_values.bru_mapper_aggregate Man page Source code
ibm_values.bru_mapper_collect Man page Source code
ibm_values.bru_mapper_const Man page Source code
ibm_values.bru_mapper_factor Man page Source code
ibm_values.bru_mapper_fm_mesh_1d Man page Source code
ibm_values.bru_mapper_fm_mesh_2d Man page Source code
ibm_values.bru_mapper_inla_mesh_1d Man page Source code
ibm_values.bru_mapper_inla_mesh_2d Man page Source code
ibm_values.bru_mapper_linear Man page Source code
ibm_values.bru_mapper_marginal Man page Source code
ibm_values.bru_mapper_matrix Man page Source code
ibm_values.bru_mapper_mesh_B Man page Source code
ibm_values.bru_mapper_multi Man page Source code
ibm_values.bru_mapper_pipe Man page Source code
ibm_values.bru_mapper_scale Man page Source code
ibm_values.bru_mapper_shift Man page Source code
ibm_values.bru_mapper_taylor Man page Source code
ibm_values.default Man page Source code
iinla Man page Source code
index_eval Man page Source code
index_eval.component Man page Source code
index_eval.component_list Man page Source code
inla.posterior.sample.structured Source code
inla.spde2.pcmatern_B Man page Source code
inla_result_latent_idx Source code
inla_subset_eval Man page Source code
inla_subset_eval.component_list Man page Source code
inlabru Man page
inlabru-deprecated Man page
inlabru-package Man page
input_eval Man page Source code
input_eval.bru_input Man page Source code
input_eval.component Man page Source code
input_eval.component_list Man page Source code
input_eval_layer Source code
int.quadrature Source code
integration_weight_aggregation Man page Source code
ipoints Man page Source code
is.inside Man page Source code
lambda1_1D Man page
lambda2_1D Man page
lambda3_1D Man page
latent_names Source code
length.bru_log Man page
lgcp Man page Source code
like Man page Source code
like_list Man page Source code
like_list.bru_like Man page Source code
like_list.list Man page Source code
lin_predictor Source code
line_search_optimisation_target Source code
line_search_optimisation_target_exact Source code
local_basic_fixed_effect_testdata Man page Source code
local_basic_intercept_testdata Man page Source code
local_bru_options_set Man page Source code
local_bru_safe_inla Man page Source code
local_bru_testthat_assign Man page Source code
local_bru_testthat_setup Man page Source code
local_bru_testthat_tolerances Man page Source code
local_mrsea_convert Man page Source code
local_testthat Man page
make_hierarchical_mesh_basis Man page Source code
make_mapper Source code
make_submapper Source code
make_track_plots Source code
make_unique_inputs Source code
makepoly Source code
materncov.bands Man page Source code
mesh_triangle_integration Man page Source code
mexdolphin Man page
mexdolphin_sf Man page
montecarlo.posterior Source code
mrsea Man page
multiplot Man page Source code
nonlin_predictor Source code
parse_inclusion Man page Source code
pixels Man page Source code
plaplace Source code
plot.bru Man page Source code
plot.bru_prediction Man page Source code
plot.prediction Man page Source code
plotmarginal.inla Man page Source code
plotsample Man page Source code
point2count Man page Source code
predict.bru Man page Source code
print.bru_log Man page Source code
print.bru_mapper Man page Source code
print.bru_used Man page Source code
print.summary_bru Man page
print.summary_bru_info Man page Source code
print.summary_bru_mapper Man page Source code
print.summary_bru_model Man page Source code
print.summary_bru_options Man page Source code
print.summary_component Man page Source code
print.summary_component_list Man page Source code
pts1 Man page
pts2 Man page
pts3 Man page
qlaplace Source code
reexports Man page
replace_dollar Source code
require_args Source code
resave_package_data Source code
robins_subset Man page
row_kron Man page Source code
sample.lgcp Man page Source code
scale_state Source code
seals Man page
seals_sp Man page
sfill Source code
shrimp Man page
sline Man page Source code
spatial.to.ppp Man page Source code
spde.posterior Man page Source code
spoly Man page Source code
summary.bru Man page
summary.bru_info Man page Source code
summary.bru_mapper Man page Source code
summary.bru_mapper_collect Man page Source code
summary.bru_mapper_multi Man page Source code
summary.bru_mapper_pipe Man page Source code
summary.bru_model Man page Source code
summary.bru_options Man page Source code
summary.component Man page Source code
summary.component_list Man page Source code
tidy_state Source code
tidy_states Source code
toygroups Man page
toypoints Man page
variables.inla Source code
vertices.inla.mesh Man page Source code
inlabru documentation built on July 2, 2024, 1:07 a.m.

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