fup_uc_PREJAGS: Fup UC Level-4 PREJAGS arguments
In invitroTKstats: In Vitro Toxicokinetic Data Processing and Analysis Pipeline

fup_uc_PREJAGS

R Documentation

Fup UC Level-4 PREJAGS arguments

Description

The arguments given to JAGS for the tested compound during level-4 processing of mass spectrometry measurements of plasma protein binding (PPB) via ultracentrifugation (UC) for per- and poly-fluorinated alkyl substance (PFAS) samples. Experiments were led by Dr.s Marci Smeltz and Barbara Wetmore \insertCitesmeltz2023plasmainvitroTKstats. This list is overwritten for each tested compound. Therefore, only contains arguments given to JAGS for the last tested compound.

Usage

fup_uc_PREJAGS

Format

A named list with 10 elements:

Num.cal: Unique number of Calibration values for the tested compound
Num.obs: Total number of observations for the tested compound
Response.obs: Response of all samples for the tested compound
obs.conc: Indices of the Test.Compound.Conc values that corresponds to all samples' Test.Compound.Conc for the tested compound.
obs.cal: Indices of the unique Calibration values that corresponds to all samples' Calibration for the tested compound.
Conc: Test.Compound.Conc of the "CC" sample types + three placeholder concentrations ("T1", "T5", "AF") per Biological.Replicates series
Num.cc.obs: Number of "CC" sample types for the tested compound
Num.series: Unique number of Biological.Replicates series
Dilution.Factor: Dilution.Factor of all samples for the tested compound (number of times the sample was diluted)
Test.Nominal.Conc: Unique Test.Nominal.Conc values (expected initial concentration) of all samples for the tested compound