buildMidPatternKmerTable: Count k-mers with specified middle pattern from given...
In kmeRtone: Multi-Purpose and Flexible k-Meric Enrichment Analysis Software
View source: R/buildMidPatternKmerTable.R
buildMidPatternKmerTable R Documentation
Count k-mers with specified middle pattern from given sequence(s) and build
a data.table of k-mer counts.
Description
Only existed k-mers are returned in data.table object.
Usage
buildMidPatternKmerTable(dna.seqs, k, mid.patterns, remove.N = TRUE)
Arguments
dna.seqs
String of sequence(s).
k
Size of kmer.
mid.patterns
Middle patterns.
remove.N
Remove unknown base? Default is TRUE.
Value
A data.table object with column kmer and N.
kmeRtone documentation built on Sept. 11, 2024, 9:12 p.m.
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View source: R/buildMidPatternKmerTable.R
| buildMidPatternKmerTable | R Documentation |
Count k-mers with specified middle pattern from given sequence(s) and build a data.table of k-mer counts.
Description
Only existed k-mers are returned in data.table object.
Usage
buildMidPatternKmerTable(dna.seqs, k, mid.patterns, remove.N = TRUE)
Arguments
dna.seqs |
String of sequence(s). |
k |
Size of kmer. |
mid.patterns |
Middle patterns. |
remove.N |
Remove unknown base? Default is TRUE. |
Value
A data.table object with column kmer and N.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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