countMidPatternContext2: Locate a middle sequence pattern and count its sequence...

In kmeRtone: Multi-Purpose and Flexible k-Meric Enrichment Analysis Software

Locate a middle sequence pattern and count its sequence context.

Description

This function searches for a specified middle pattern within a given sequence. It then counts the occurrences of specific context patterns within a defined window size around the middle pattern. The function returns a map where keys are the counts of context patterns found and values are the frequencies of these counts.

Usage

countMidPatternContext2(sequence, mid_pattern, window, context_patterns)

Arguments

sequence	A string representing the sequence to be analyzed.
mid_pattern	A string representing the middle pattern to search for within the sequence.
window	An integer specifying the size of the surrounding window around the middle pattern.
context_patterns	A vector of strings representing the context patterns to search for within the window.

Value

A std::unordered_map<int,int> where keys are the counts of context patterns found and values are the frequencies of these counts.

kmeRtone documentation built on Sept. 11, 2024, 9:12 p.m.