downloadUCSCgenome: Function downloads chromosome-separated fasta genome...
In kmeRtone: Multi-Purpose and Flexible k-Meric Enrichment Analysis Software
View source: R/downloadUCSCgenome.R
downloadUCSCgenome R Documentation
Function downloads chromosome-separated fasta genome sequences from the UCSC
database. Users can specify a genome name, an output folder, and a specific
chromosome or chromosomes. There's an option to choose the download method as well.
Description
Function downloads chromosome-separated fasta genome sequences from the UCSC
database. Users can specify a genome name, an output folder, and a specific
chromosome or chromosomes. There's an option to choose the download method as well.
Usage
downloadUCSCgenome(genome.name, output.path, chr.name, method = "curl")
Arguments
genome.name
Genome name (e.g., hg19, hg38, mm19).
output.path
Output folder for the downloaded sequences.
chr.name
Specific chromosome to download; defaults to all if unspecified.
method
Download method for the download.file function.
Value
An output folder containing chromosome-separated fasta files.
kmeRtone documentation built on Sept. 11, 2024, 9:12 p.m.
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View source: R/downloadUCSCgenome.R
| downloadUCSCgenome | R Documentation |
Function downloads chromosome-separated fasta genome sequences from the UCSC database. Users can specify a genome name, an output folder, and a specific chromosome or chromosomes. There's an option to choose the download method as well.
Description
Function downloads chromosome-separated fasta genome sequences from the UCSC database. Users can specify a genome name, an output folder, and a specific chromosome or chromosomes. There's an option to choose the download method as well.
Usage
downloadUCSCgenome(genome.name, output.path, chr.name, method = "curl")
Arguments
genome.name |
Genome name (e.g., hg19, hg38, mm19). |
output.path |
Output folder for the downloaded sequences. |
chr.name |
Specific chromosome to download; defaults to all if unspecified. |
method |
Download method for the |
Value
An output folder containing chromosome-separated fasta files.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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