countKmers: Count k-mers from string(s) using a simple hash table.
In kmeRtone: Multi-Purpose and Flexible k-Meric Enrichment Analysis Software
countKmers R Documentation
Count k-mers from string(s) using a simple hash table.
Description
Count only observed k-mers. Biostrings::oligonucleotideFrequency reports all
possible k-mers. For k > 12, the memory for creating empty k-mer counts
spiked and crashed the R session.
Usage
countKmers(sequences, k)
Arguments
sequences
Sequence strings.
k
Size of k-mer.
Value
A vector of k-mer counts. The counts of multiple sequences are
combined, similar to Biostrings::oligonucleotideFrequency simplify.as
"collapsed".
kmeRtone documentation built on Sept. 11, 2024, 9:12 p.m.
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| countKmers | R Documentation |
Count k-mers from string(s) using a simple hash table.
Description
Count only observed k-mers. Biostrings::oligonucleotideFrequency reports all possible k-mers. For k > 12, the memory for creating empty k-mer counts spiked and crashed the R session.
Usage
countKmers(sequences, k)
Arguments
sequences |
Sequence strings. |
k |
Size of k-mer. |
Value
A vector of k-mer counts. The counts of multiple sequences are combined, similar to Biostrings::oligonucleotideFrequency simplify.as "collapsed".
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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