countDistribution: Function performs an analysis of the distribution of genomic...

In kmeRtone: Multi-Purpose and Flexible k-Meric Enrichment Analysis Software

Function performs an analysis of the distribution of genomic cases.

Description

Check case distribution in replicates, chromosomes, and strands. Check case base composition and filter out other case.patterns. Then, it generates various plots like bar plots and Venn/Euler diagrams.

Usage

countDistribution(case, genome, case.pattern, output.path = "./")

Arguments

case	A Coordinate class object or similar structure for genomic data.
genome	Genome class object or similar structure.
case.pattern	String patterns to consider in the analysis.
output.path	Output path for saving the analysis results.

kmeRtone documentation built on Sept. 11, 2024, 9:12 p.m.