tests/prLogistic.R

## data set and formula extracted from ?prLogisticDelta example
##   (Thailand, clustered-data) in prLogistic package
load(system.file("testdata","prLogistic.RData",package="lme4"))
library(lme4)

(testLevel <- lme4:::testLevel())
if (testLevel > 2) {
    print(system.time(
    lme4_est <- glmer(rgi ~ sex + pped + (1|schoolid),
                      data = dataset, family=binomial)
    ))
    lme4_results <- list(sigma= sqrt(unname(unlist(VarCorr(lme4_est)))),
                         beta = fixef(lme4_est))

    ## stored results from other pkgs
    glmmML_est <- list(sigma = 1.25365353546143,
                       beta = c("(Intercept)" = -2.19478801858317,
                           "sex" = 0.548884468743364, "pped"= -0.623835613907385))
    lme4.0_est <- list(sigma = 1.25369539060849,
                       beta = c("(Intercept)" = -2.19474529099587,
                           "sex" = 0.548900267825802, "pped"= -0.623934772981894))

    source(system.file("test-tools-1.R", package = "Matrix"))#-> assert.EQ() etc
    assert.EQ.(lme4_results, glmmML_est, tol=3e-3)
    assert.EQ.(lme4_results, lme4.0_est, tol=3e-3)
    print(lme4_est)
}

Try the lme4 package in your browser

Any scripts or data that you put into this service are public.

lme4 documentation built on June 22, 2021, 9:07 a.m.