API for lme4
Linear Mixed-Effects Models using 'Eigen' and S4
| Global functions | |
|---|---|
| .get.checkingOpts | Source code |
| .hasScale | Source code |
| .isDiagonal.sq.matrix | Source code |
| .makeCC | Man page Source code |
| .merMod.msgs | Source code |
| .minimalOptinfo | Source code |
| .onLoad | Source code |
| .onUnload | Source code |
| .optinfo | Source code |
| .prt.VC | Man page |
| .prt.aictab | Man page |
| .prt.call | Man page |
| .prt.family | Man page |
| .prt.grps | Man page |
| .prt.methTit | Man page Man page |
| .prt.resids | Man page |
| .prt.warn | Man page |
| .simpleCap | Source code |
| .simulateFun | Man page Source code |
| Arabidopsis | Man page |
| Cv_to_Sv | Man page Source code |
| Cv_to_Vv | Man page Source code |
| Dyestuff | Man page |
| Dyestuff2 | Man page |
| GHrule | Man page |
| GQN | Man page |
| GQdk | Man page Source code |
| Gamma_simfun | Source code |
| InstEval | Man page |
| NelderMead | Man page |
| NelderMead-class | Man page |
| Nelder_Mead | Man page Source code |
| Pastes | Man page |
| Penicillin | Man page |
| REMLcrit | Man page Source code |
| RHSForm | Source code |
| RglmerWrkIter | Source code |
| Sv_to_Cv | Man page Source code |
| VarCorr | Man page |
| VarCorr.merMod | Man page |
| VerbAgg | Man page |
| Vv_to_Cv | Man page Source code |
| `%i%` | Source code |
| `RHSForm<-` | Source code |
| abbrDeparse | Source code |
| all0 | Source code |
| allFit | Man page Source code |
| allVarsRec | Source code |
| anova.merMod | Man page |
| anovaLmer | Source code |
| anyBars | Source code |
| arrange.condVar | Source code |
| array_to_bdiag | Source code |
| as.data.frame.VarCorr.merMod | Man page |
| as.data.frame.bootMer | Source code |
| as.data.frame.ranef.mer | Man page |
| as.data.frame.thpr | Man page |
| as.function.merMod | Man page Source code |
| augment.RE | Source code |
| barnames | Source code |
| bdiag_to_array | Source code |
| bdiag_to_mlist | Source code |
| binomial_simfun | Source code |
| bootMer | Man page Source code |
| cake | Man page |
| cbpp | Man page |
| chck1 | Source code |
| checkArgs | Source code |
| checkConv | Man page Source code |
| checkCtrlLevels | Source code |
| checkFormulaData | Source code |
| checkHess | Source code |
| checkNlevels | Source code |
| checkResponse | Source code |
| checkScaleX | Source code |
| checkZdims | Source code |
| checkZrank | Source code |
| chk.cconv | Source code |
| chk.convOpt | Source code |
| chkRank.drop.cols | Source code |
| coef.lmList4 | Source code |
| coef.merMod | Man page |
| coefMer | Source code |
| colSort | Source code |
| combineLists | Source code |
| condVar | Source code |
| confint.bootMer | Source code |
| confint.lmList4 | Source code |
| confint.merMod | Man page |
| confint.thpr | Man page |
| convergence | Man page |
| cooks.distance.influence.merMod | Man page Source code |
| cooks.distance.merMod | Man page Source code |
| cov2sdcor | Man page Source code |
| densityplot.thpr | Man page |
| deriv12 | Source code |
| devCrit | Source code |
| devcomp | Man page |
| devfun2 | Man page |
| deviance.merMod | Man page Source code |
| df.residual.merMod | Man page Source code |
| dfbeta.influence.merMod | Man page Source code |
| dfbetas.influence.merMod | Man page Source code |
| doCheck | Source code |
| dotplot.coef.mer | Source code |
| dotplot.ranef.mer | Man page Source code |
| drop1.merMod | Man page Source code |
| dropOffset | Source code |
| dummy | Man page Source code |
| est_theta | Source code |
| expandDoubleVerts | Man page Source code |
| extractAIC.merMod | Man page Source code |
| factorize | Man page Source code |
| family.glmResp | Source code |
| family.lmResp | Source code |
| family.merMod | Man page Source code |
| family.nlsResp | Source code |
| family2char | Source code |
| findbars | Man page Source code |
| fitted.merMod | Man page Source code |
| fixed.effects | Man page Source code |
| fixef | Man page |
| fixef.merMod | Man page Source code |
| forceCopy | Source code |
| formatVC | Man page |
| formula.lmList4 | Source code |
| formula.merMod | Man page Source code |
| fortify | Man page |
| fortify.merMod | Man page |
| gamma.shape.merMod | Source code |
| gaussian_simfun | Source code |
| get.orig.levs | Source code |
| getConv | Source code |
| getData | Man page |
| getData.merMod | Man page Source code |
| getFixedFormula | Source code |
| getGroups.lmList4 | Source code |
| getGroupsFormula | Source code |
| getGroupsFormula.merMod | Source code |
| getIDLabels | Source code |
| getL | Man page |
| getL,merMod-method | Man page |
| getME | Man page |
| getME.merMod | Man page |
| getMsg | Source code |
| getNBdisp | Source code |
| getNBdisp.fam | Source code |
| getResponseFormula | Source code |
| get_clen | Source code |
| glFormula | Man page |
| glmFamily | Man page |
| glmFamily-class | Man page |
| glmResp | Man page |
| glmResp-class | Man page |
| glmer | Man page Source code |
| glmer.nb | Man page Source code |
| glmerControl | Man page |
| glmerLaplaceHandle | Man page Source code |
| glmerMod-class | Man page |
| glmerPwrssUpdate | Source code |
| golden | Man page |
| golden-class | Man page |
| grouseticks | Man page |
| grouseticks_agg | Man page |
| grpfact | Source code |
| hasNoScale | Source code |
| hasScale | Source code |
| hatvalues.merMod | Man page |
| inForm | Source code |
| influence.merMod | Man page Source code |
| inverse.gaussian_simfun | Source code |
| isAnyArgBar | Source code |
| isBar | Source code |
| isFlexLambda | Source code |
| isGLMM | Man page Source code |
| isGLMM.merMod | Man page Source code |
| isGLMlist | Source code |
| isLMM | Man page Source code |
| isLMM.merMod | Man page Source code |
| isNBfamily | Source code |
| isNLMM | Man page Source code |
| isNLMM.merMod | Man page Source code |
| isNested | Man page Source code |
| isRE | Source code |
| isREML | Man page Source code |
| isREML.merMod | Man page Source code |
| isSingular | Man page Source code |
| lFormula | Man page Source code |
| levelfun | Source code |
| llikAIC | Man page |
| lmList | Man page Source code |
| lmList4-class | Man page |
| lmResp | Man page |
| lmResp-class | Man page |
| lme4 | Man page |
| lme4-package | Man page |
| lme4_testlevel | Man page Source code |
| lmer | Man page Source code |
| lmerControl | Man page |
| lmerMod-class | Man page |
| lmerResp | Man page |
| lmerResp-class | Man page |
| log.thpr | Man page |
| logLik.merMod | Man page Source code |
| logProf | Man page |
| makeFac | Source code |
| mcmcsamp | Man page Source code |
| mcmcsamp.merMod | Source code |
| merControl | Source code |
| merMod | Man page |
| merMod-class | Man page |
| merPredD | Man page |
| merPredD-class | Man page |
| methTitle | Man page |
| mkBlist | Source code |
| mkDataTemplate | Man page Source code |
| mkGlmerDevfun | Man page |
| mkLmerDevfun | Man page |
| mkMerMod | Man page Source code |
| mkMinimalData | Source code |
| mkNewReTrms | Man page Source code |
| mkParsTemplate | Man page Source code |
| mkReTrms | Man page Source code |
| mkRespMod | Man page Source code |
| mkVarCorr | Man page |
| mkdevfun | Source code |
| mlist2vec | Man page Source code |
| mlist_to_array | Source code |
| mmList | Source code |
| mmList.formula | Source code |
| mmList.merMod | Source code |
| model.frame.merMod | Man page Source code |
| model.matrix.merMod | Man page Source code |
| modelFormula | Source code |
| modular | Man page |
| namedList | Man page Source code |
| negative.binomial | Man page |
| ngrps | Man page Source code |
| ngrps.default | Source code |
| ngrps.factor | Source code |
| ngrps.merMod | Man page Source code |
| nlformula | Man page Source code |
| nlmer | Man page Source code |
| nlmerControl | Man page Source code |
| nlmerMod-class | Man page |
| nlminbwrap | Man page Source code |
| nloptwrap | Man page |
| nlsResp | Man page |
| nlsResp-class | Man page |
| nmkbw | Source code |
| noLHSform | Source code |
| nobars | Man page Source code |
| nobars_ | Source code |
| nobs | Man page |
| nobs.merMod | Man page Source code |
| normalizeFamilyName | Source code |
| npar.merMod | Source code |
| optTheta | Source code |
| optimizeGlmer | Man page |
| optimizeLmer | Man page |
| plot.allFit | Source code |
| plot.coef.mer | Source code |
| plot.lmList | Man page |
| plot.lmList4.confint | Source code |
| plot.merMod | Man page Source code |
| plot.ranef.mer | Source code |
| poisson_simfun | Source code |
| pooledSD | Source code |
| predict.merMod | Man page Source code |
| print.VarCorr.merMod | Man page |
| print.allFit | Source code |
| print.bootMer | Source code |
| print.bootWarnings | Source code |
| print.merMod | Man page |
| print.ranef.mer | Source code |
| print.summary.merMod | Man page |
| profile-methods | Man page |
| profile.merMod | Man page Source code |
| profnames | Source code |
| pvalues | Man page |
| qqmath.merMod | Man page |
| qqmath.ranef.mer | Man page Source code |
| quad.tdiag | Source code |
| quickSimulate | Source code |
| random.effects | Source code |
| ranef | Man page |
| ranef.merMod | Man page Source code |
| reFormHack | Source code |
| reOnly | Source code |
| rePCA | Man page Source code |
| rePCA.merMod | Source code |
| rePos | Man page |
| rePos-class | Man page |
| reexpr | Source code |
| refit | Man page Source code |
| refit.merMod | Man page Source code |
| refit2.merMod | Source code |
| refitML | Man page Source code |
| refitML.merMod | Man page |
| refitNB | Source code |
| replaceTerm | Source code |
| residuals.glmResp | Man page |
| residuals.lmResp | Man page |
| residuals.merMod | Man page |
| safe_chol | Source code |
| sdcor2cov | Man page Source code |
| setNBdisp | Source code |
| setParams | Source code |
| show,lmList4-method | Man page |
| show,merMod-method | Man page |
| show.merMod | Man page |
| show.summary.merMod | Man page |
| sigma | Man page |
| sigma.lmList4 | Source code |
| sigma.merMod | Man page Source code |
| simulate.formula | Man page Source code |
| simulate.formula_lhs | Source code |
| simulate.formula_lhs_ | Source code |
| simulate.merMod | Man page Source code |
| sleepstudy | Man page |
| splitFormula | Source code |
| splom.thpr | Man page |
| subbars | Man page Source code |
| subnms | Source code |
| summary.allFit | Source code |
| summary.merMod | Man page |
| summary.prcomplist | Source code |
| summary.summary.merMod | Man page |
| termnms | Source code |
| terms.merMod | Man page Source code |
| testLevel | Source code |
| troubleshooting | Man page |
| update.lmList4 | Source code |
| update.merMod | Man page Source code |
| updateGlmerDevfun | Man page |
| varianceProf | Man page |
| vcconv | Man page |
| vcov.merMod | Man page |
| vcov.summary.merMod | Man page |
| vec2STlist | Man page Source code |
| vec2mlist | Man page Source code |
| weights.merMod | Man page |
| wmsg | Source code |
| xyplot.thpr | Man page |
| || | Man page |
