Description Usage Arguments Details Value Author(s) See Also Examples
This function generates a table containing the genetic markers and thier associated metabolomic variables and estimated LOD score.
1 | summary_mQTL(results, Th = 5)
|
results |
mQTL mapping results |
Th |
Threshold of the top accepted LOD |
Generates a text file containing a table of results
returns Summaries
Jean-Baptiste Cazier and Lyamine Hedjazi
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | ## Not run:
## Pre-process data
infile<-"ReducedData.dat" ## Reduced data by SRV
cleangen<-"CleanGenoFile.dat" ## Genotype data file in csvs format
nperm <- 0 ## Number of permutations
MQTL_results<-process_mQTL(infile, cleangen, nperm))
T=10 ## LOD threshold
summary_mQTL(results,T=8)## summarizes mQTL results in a table
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.