peakPeaks: Peak picking algorithm

Description Usage Arguments Value Author(s) References See Also Examples

View source: R/mQTL.R

Description

Identification of peaks in metabolomic data based on the calculation of smoothed derivates using Savitzky-Golay filter. The peak is identified if derivative crosses zero, i.e. sign(X'(i))>sing(X'(i+1)).

Usage

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peakPeaks(SpSmooth, dpDerivs, Sp)

Arguments

SpSmooth

smoothed spectrum

dpDerivs

smoothed derivative of the spectrum

Sp

Spectrum of intrest

Value

identified peaks

Author(s)

Lyamine Hedjazi

References

Veselkov,K. et al (2009) Recursive Segment-Wise Peak Alignment of Biological 1H NMR Spectra for Improved Metabolic Biomarker Recovery, Anal. Chem., 81(1), 56-66.

See Also

sgolayDeriv

Examples

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## Data
Sp=matrix(rnorm(10*13454,mean=0,sd=1), nrow=10,ncol=13454)

## Peak picking
Spectrum<-Sp[1,]
iOrder <- 3
iFrameLen<- 11

SpDerivs=sgolayDeriv(Spectrum,iOrder,iFrameLen,2)
SpSmooth = sgolayDeriv(Spectrum,iOrder,iFrameLen,1)
peaks=peakPeaks(SpSmooth,SpDerivs,Spectrum)

mQTL documentation built on May 29, 2017, 9:46 a.m.